RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ECM29Q5VYK3 1845 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 CYP2D7A0A087X1C5 515 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 PPP1R3GB7ZBB8 358 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 PECAM1P16284 738 aaPredicted RBP12.01□□□□□ -0.49
USP3-206ENST00000558157 SCTRP47872 440 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 PAK2Q13177 524 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 LMBR1Q8WVP7 490 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 CUL5Q93034 780 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 OSBPL7Q9BZF2 842 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 RNF14Q9UBS8 474 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 RWDD2AQ9UIY3 292 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 CAPN11Q9UMQ6 739 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 TACC3Q9Y6A5 838 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 MYH8P13535 1937 aa12□□□□□ -0.49
USP3-206ENST00000558157 ZNF233A6NK53 670 aa12□□□□□ -0.49
USP3-206ENST00000558157 SMIM22K7EJ46 135 aa12□□□□□ -0.49
USP3-206ENST00000558157 GSTA1P08263 222 aa12□□□□□ -0.49
USP3-206ENST00000558157 METAP2P50579 478 aaKnown RBP eCLIP12□□□□□ -0.49
USP3-206ENST00000558157 RHBDL3P58872 404 aa12□□□□□ -0.49
USP3-206ENST00000558157 PPARAQ07869 468 aa12□□□□□ -0.49
USP3-206ENST00000558157 SAFBQ15424 915 aaKnown RBP eCLIP12□□□□□ -0.49
USP3-206ENST00000558157 LRIG3Q6UXM1 1119 aa12□□□□□ -0.49
USP3-206ENST00000558157 SH2D3CQ8N5H7 860 aa12□□□□□ -0.49
USP3-206ENST00000558157 EIF1ADQ8N9N8 165 aaKnown RBP12□□□□□ -0.49
USP3-206ENST00000558157 WHAMMQ8TF30 809 aa12□□□□□ -0.49
USP3-206ENST00000558157 CNKSR2Q8WXI2 1034 aa12□□□□□ -0.49
USP3-206ENST00000558157 SPAG5Q96R06 1193 aa12□□□□□ -0.49
USP3-206ENST00000558157 MOV10L1Q9BXT6 1211 aaKnown RBP12□□□□□ -0.49
USP3-206ENST00000558157 ATP8A2Q9NTI2 1148 aa12□□□□□ -0.49
USP3-206ENST00000558157 HAUS2Q9NVX0 235 aa12□□□□□ -0.49
USP3-206ENST00000558157 ZNHIT6Q9NWK9 470 aaKnown RBP12□□□□□ -0.49
USP3-206ENST00000558157 LTBP3Q9NS15 1303 aa12□□□□□ -0.49
USP3-206ENST00000558157 GOLGA6L10A6NI86 522 aa12□□□□□ -0.49
USP3-206ENST00000558157 MINDY4BA8MYZ0 360 aa12□□□□□ -0.49
USP3-206ENST00000558157 DNM1LO00429 736 aa12□□□□□ -0.49
USP3-206ENST00000558157 TRAPPC3O43617 180 aa12□□□□□ -0.49
USP3-206ENST00000558157 ATP6V1G2O95670 118 aa12□□□□□ -0.49
USP3-206ENST00000558157 KRT14P02533 472 aa12□□□□□ -0.49
USP3-206ENST00000558157 PAEPP09466 180 aa12□□□□□ -0.49
USP3-206ENST00000558157 CD44P16070 742 aaKnown RBP12□□□□□ -0.49
USP3-206ENST00000558157 CRKP46108 304 aa12□□□□□ -0.49
USP3-206ENST00000558157 CDK17Q00537 523 aa12□□□□□ -0.49
USP3-206ENST00000558157 EVX2Q03828 476 aa12□□□□□ -0.49
USP3-206ENST00000558157 TCP11X2Q5H9J9 407 aa12□□□□□ -0.49
USP3-206ENST00000558157 CACNA2D3Q8IZS8 1091 aa12□□□□□ -0.49
USP3-206ENST00000558157 NKX2-3Q8TAU0 364 aa12□□□□□ -0.49
USP3-206ENST00000558157 MICAL1Q8TDZ2 1067 aa12□□□□□ -0.49
USP3-206ENST00000558157 TGFBRAP1Q8WUH2 860 aa12□□□□□ -0.49
USP3-206ENST00000558157 TEKT1Q969V4 418 aa12□□□□□ -0.49
USP3-206ENST00000558157 INCENPQ9NQS7 918 aa12□□□□□ -0.49
USP3-206ENST00000558157 ZNRF3Q9ULT6 936 aa12□□□□□ -0.49
USP3-206ENST00000558157 CORO1CQ9ULV4 474 aaPredicted RBP12□□□□□ -0.49
USP3-206ENST00000558157 ERICH2A1L162 156 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 RNF225M0QZC1 329 aaPredicted RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 TACC1O75410 805 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 CYP2D6P10635 497 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 CCT6AP40227 531 aaKnown RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 PAFAH1B1P43034 410 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 PRELPP51888 382 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 KIF5AQ12840 1032 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 E2F5Q15329 346 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 HAUS3Q68CZ6 603 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 KCTD16Q68DU8 428 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 CAPRIN2Q6IMN6 1127 aaKnown RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 KLHL10Q6JEL2 608 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 RSBN1LQ6PCB5 846 aaPredicted RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 MAPKAPK5Q8IW41 473 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 RETREG2Q8NC44 543 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 FOXP1Q9H334 677 aaPredicted RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 NOD2Q9HC29 1040 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 GPHNQ9NQX3 736 aaPredicted RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 GDF3Q9NR23 364 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 ANGEL1Q9UNK9 670 aaKnown RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 TRPC6Q9Y210 931 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 C15orf41Q9Y2V0 281 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 PCDHAC2Q9Y5I4 1007 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 USP17L12C9JPN9 530 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 USP17L21D6R901 530 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 ZNF185O15231 689 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 BUB1BO60566 1050 aaPredicted RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 PLCG2P16885 1265 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 SEC24CP53992 1094 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 ANTXR2P58335 489 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 DPYDQ12882 1025 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 BIRC3Q13489 604 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 SLC4A8Q2Y0W8 1093 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 AKNAD1Q5T1N1 836 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 C8orf74Q6P047 294 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 HHIPL2Q6UWX4 724 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 APLFQ8IW19 511 aaPredicted RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 CALR3Q96L12 384 aaKnown RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 CCDC43Q96MW1 224 aaKnown RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 ANKRD27Q96NW4 1050 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 OSBPL9Q96SU4 736 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 NUP58Q9BVL2 599 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 KIF9Q9HAQ2 790 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 ARPP21Q9UBL0 812 aaPredicted RBP11.99□□□□□ -0.49
USP3-206ENST00000558157 ANAPC4Q9UJX5 808 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 HYOU1Q9Y4L1 999 aa11.99□□□□□ -0.49
USP3-206ENST00000558157 MYH1P12882 1939 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms