RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 CIB2O75838 187 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 CDC25AP30304 524 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 TRAPPC10P48553 1259 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 CEP57Q86XR8 500 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 MAP7D3Q8IWC1 876 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 THNSL1Q8IYQ7 743 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 IRAK4Q9NWZ3 460 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 NDUFA8P51970 172 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 NR5A1Q13285 461 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 SDCCAG8Q86SQ7 713 aaPredicted RBP8.96□□□□□ -0.98
SYNE2-220ENST00000555612 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.96□□□□□ -0.98
SYNE2-220ENST00000555612 ATP2A3Q93084 1043 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 CNOT6LQ96LI5 555 aaKnown RBP8.96□□□□□ -0.98
SYNE2-220ENST00000555612 MSTO1Q9BUK6 570 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 FEZ2Q9UHY8 353 aaPredicted RBP8.96□□□□□ -0.98
SYNE2-220ENST00000555612 FEM1BQ9UK73 627 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 VWDEQ8N2E2 1590 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 TUBBP07437 444 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 TWF2Q6IBS0 349 aaKnown RBP8.95□□□□□ -0.98
SYNE2-220ENST00000555612 TTBK2Q6IQ55 1244 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 RNF139Q8WU17 664 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 ZNF653Q96CK0 615 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 CARD6Q9BX69 1037 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 TMEM206Q9H813 350 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 ANAPC5Q9UJX4 755 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 MTMR6Q9Y217 621 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 GOLGA8IPA6NC78 632 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 GOLGA8JA6NMD2 632 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 ZNF157P51786 506 aaPredicted RBP8.95□□□□□ -0.98
SYNE2-220ENST00000555612 PRPSAP1Q14558 356 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 NBPF11Q86T75 865 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 SCYL1Q96KG9 808 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 BRIP1Q9BX63 1249 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 CRB1P82279 1406 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 LRRN2O75325 713 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 H2AFZP0C0S5 128 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 MTMR1Q13613 665 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 OR6B2Q6IFH4 312 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 H2AFVQ71UI9 128 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 CCNYQ8ND76 341 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 MAGEF1Q9HAY2 307 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 STAP2Q9UGK3 403 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 MAGED2Q9UNF1 606 aaPredicted RBP8.95□□□□□ -0.98
SYNE2-220ENST00000555612 MAD1L1Q9Y6D9 718 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 TAF1CQ15572 869 aaPredicted RBP8.95□□□□□ -0.98
SYNE2-220ENST00000555612 HEXIM2Q96MH2 286 aaKnown RBP8.95□□□□□ -0.98
SYNE2-220ENST00000555612 IMPACTQ9P2X3 320 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 ABCB11O95342 1321 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 SPATA31A6Q5VVP1 1343 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 CHD1O14646 1710 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 K7ERI5 159 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 SLC44A5Q8NCS7 719 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 AK8Q96MA6 479 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 CPVLQ9H3G5 476 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 HACL1Q9UJ83 578 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 KCNH4Q9UQ05 1017 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 ZNF148Q9UQR1 794 aa8.95□□□□□ -0.98
SYNE2-220ENST00000555612 BRD1O95696 1058 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 FCER1AP12319 257 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 SLC8A2Q9UPR5 921 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 KRIT1O00522 736 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 DPYSL4O14531 572 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 RPS6KA2Q15349 733 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 VPS72Q15906 364 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 SP8Q8IXZ3 490 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 OR6B3Q8NGW1 331 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 PPP4R1Q8TF05 950 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 GRK7Q8WTQ7 553 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 PARVGQ9HBI0 331 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 ABCC3O15438 1527 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 ZNF233A6NK53 670 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 PLEKHA8P1O95397 391 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 SF3A3Q12874 501 aaKnown RBP eCLIP8.94□□□□□ -0.98
SYNE2-220ENST00000555612 PAK2Q13177 524 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 TTLL4Q14679 1199 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 MESDQ14696 234 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 PHLDB2Q86SQ0 1253 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 ELMOD1Q8N336 334 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 DESI2Q9BSY9 194 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.94□□□□□ -0.98
SYNE2-220ENST00000555612 CUEDC2Q9H467 287 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 IPO11Q9UI26 975 aaKnown RBP8.94□□□□□ -0.98
SYNE2-220ENST00000555612 A2ML1A8K2U0 1454 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 UNC13BO14795 1591 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 SPDYE2BA6NHP3 402 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 GOLGA8CPA6NN73 597 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 PRPF3O43395 683 aaKnown RBP8.94□□□□□ -0.98
SYNE2-220ENST00000555612 GSTA1P08263 222 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 GSTA2P09210 222 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 SPDYE6P0CI01 402 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 HMGCS2P54868 508 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 EPHA10Q5JZY3 1008 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 GKAP1Q5VSY0 366 aaPredicted RBP8.94□□□□□ -0.98
SYNE2-220ENST00000555612 GDAP1Q8TB36 358 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 NSUN6Q8TEA1 469 aaKnown RBP8.94□□□□□ -0.98
SYNE2-220ENST00000555612 TCP11Q8WWU5 503 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 RAB17Q9H0T7 212 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 UBN1Q9NPG3 1134 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 FANCLQ9NW38 375 aa8.94□□□□□ -0.98
SYNE2-220ENST00000555612 CNOT7Q9UIV1 285 aaKnown RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms