RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 TBX10O75333 385 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 F2P00734 622 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 ZFYP08048 801 aaPredicted RBP11.37□□□□□ -0.59
SCFD1-215ENST00000555259 ZNF200P98182 395 aaPredicted RBP11.37□□□□□ -0.59
SCFD1-215ENST00000555259 HYAL1Q12794 435 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 MFSD10Q14728 455 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 KIAA0753Q2KHM9 967 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 PLEKHG4Q58EX7 1191 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 SEPT14Q6ZU15 432 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 NAPBQ9H115 298 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 ECHDC1Q9NTX5 307 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 PNMA2Q9UL42 364 aa11.37□□□□□ -0.59
SCFD1-215ENST00000555259 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.37□□□□□ -0.59
SCFD1-215ENST00000555259 RSPH10B2B2RC85 870 aa11.36□□□□□ -0.59
SCFD1-215ENST00000555259 HAS3O00219 553 aa11.36□□□□□ -0.59
SCFD1-215ENST00000555259 UPP2O95045 317 aa11.36□□□□□ -0.59
SCFD1-215ENST00000555259 RSPH10BP0C881 870 aa11.36□□□□□ -0.59
SCFD1-215ENST00000555259 ZNF286BP0CG31 522 aa11.36□□□□□ -0.59
SCFD1-215ENST00000555259 THPOP40225 353 aa11.36□□□□□ -0.59
SCFD1-215ENST00000555259 HIC1Q14526 733 aa11.36□□□□□ -0.59
SCFD1-215ENST00000555259 FBXL6Q8N531 539 aa11.36□□□□□ -0.59
SCFD1-215ENST00000555259 INCENPQ9NQS7 918 aa11.36□□□□□ -0.59
SCFD1-215ENST00000555259 FRMPD2Q68DX3 1309 aaPredicted RBP11.36□□□□□ -0.59
SCFD1-215ENST00000555259 NLRC5Q86WI3 1866 aa11.36□□□□□ -0.59
SCFD1-215ENST00000555259 ATG2AQ2TAZ0 1938 aa11.36□□□□□ -0.59
SCFD1-215ENST00000555259 WDR19Q8NEZ3 1342 aa11.35□□□□□ -0.59
SCFD1-215ENST00000555259 C5orf67F2Z3F1 127 aa11.35□□□□□ -0.59
SCFD1-215ENST00000555259 GRM6O15303 877 aa11.35□□□□□ -0.59
SCFD1-215ENST00000555259 CTNNB1P35222 781 aa11.35□□□□□ -0.59
SCFD1-215ENST00000555259 SERINC5Q86VE9 423 aa11.35□□□□□ -0.59
SCFD1-215ENST00000555259 DHX37Q8IY37 1157 aaKnown RBP11.35□□□□□ -0.59
SCFD1-215ENST00000555259 EMID1Q96A84 441 aaPredicted RBP11.35□□□□□ -0.59
SCFD1-215ENST00000555259 SEC62Q99442 399 aaKnown RBP11.35□□□□□ -0.59
SCFD1-215ENST00000555259 IFIH1Q9BYX4 1025 aaKnown RBP11.35□□□□□ -0.59
SCFD1-215ENST00000555259 LRRCC1Q9C099 1032 aa11.35□□□□□ -0.59
SCFD1-215ENST00000555259 GPCPD1Q9NPB8 672 aa11.35□□□□□ -0.59
SCFD1-215ENST00000555259 CD207Q9UJ71 328 aa11.35□□□□□ -0.59
SCFD1-215ENST00000555259 RIF1Q5UIP0 2472 aaKnown RBP11.35□□□□□ -0.59
SCFD1-215ENST00000555259 RALGAPA2Q2PPJ7 1873 aa11.35□□□□□ -0.59
SCFD1-215ENST00000555259 KMT2EQ8IZD2 1858 aa11.35□□□□□ -0.59
SCFD1-215ENST00000555259 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.34□□□□□ -0.59
SCFD1-215ENST00000555259 SMARCA5O60264 1052 aaPredicted RBP11.34□□□□□ -0.59
SCFD1-215ENST00000555259 RANBP6O60518 1105 aaKnown RBP11.34□□□□□ -0.59
SCFD1-215ENST00000555259 GTF2F1P35269 517 aaKnown RBP eCLIP11.34□□□□□ -0.59
SCFD1-215ENST00000555259 ZXDAP98168 799 aa11.34□□□□□ -0.59
SCFD1-215ENST00000555259 CTDSPL2Q05D32 466 aa11.34□□□□□ -0.59
SCFD1-215ENST00000555259 RGS22Q8NE09 1264 aa11.34□□□□□ -0.59
SCFD1-215ENST00000555259 PPTC7Q8NI37 304 aa11.34□□□□□ -0.59
SCFD1-215ENST00000555259 SEPT8Q92599 483 aa11.34□□□□□ -0.59
SCFD1-215ENST00000555259 C11orf84Q9BUA3 381 aaPredicted RBP11.34□□□□□ -0.59
SCFD1-215ENST00000555259 LMAN2LQ9H0V9 348 aa11.34□□□□□ -0.59
SCFD1-215ENST00000555259 ZBTB40Q9NUA8 1239 aa11.34□□□□□ -0.59
SCFD1-215ENST00000555259 DDX41Q9UJV9 622 aaKnown RBP11.34□□□□□ -0.59
SCFD1-215ENST00000555259 LOC730098B7Z3J9 87 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 LINC01565O15544 149 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 RB1P06400 928 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 LINC00271P0C7V0 271 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 VCPP55072 806 aaKnown RBP11.33□□□□□ -0.6
SCFD1-215ENST00000555259 LAMC2Q13753 1193 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 STXBP2Q15833 593 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 TSHZ3Q63HK5 1081 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 FIBCD1Q8N539 461 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 ATOH1Q92858 354 aaPredicted RBP11.33□□□□□ -0.6
SCFD1-215ENST00000555259 MSLNLQ96KJ4 702 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 TMEM47Q9BQJ4 181 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 OSBPL7Q9BZF2 842 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 IRF2BPLQ9H1B7 796 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 IGFLR1Q9H665 355 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 DNAH14Q0VDD8 3507 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 EYA4O95677 639 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 PDHBP11177 359 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 TOP1P11387 765 aaKnown RBP11.33□□□□□ -0.6
SCFD1-215ENST00000555259 HOXD8P13378 290 aaPredicted RBP11.33□□□□□ -0.6
SCFD1-215ENST00000555259 BMPR1AP36894 532 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 ADAM15Q13444 863 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 USH1GQ495M9 461 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 NSUN6Q8TEA1 469 aaKnown RBP11.33□□□□□ -0.6
SCFD1-215ENST00000555259 IL17RAQ96F46 866 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 TAAR1Q96RJ0 339 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 IWS1Q96ST2 819 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 COL20A1Q9P218 1284 aa11.33□□□□□ -0.6
SCFD1-215ENST00000555259 KIAA1217Q5T5P2 1943 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 FAM186AA6NE01 2351 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 FOXP2O15409 715 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 CSPG5O95196 566 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 MMP1P03956 469 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 NDUFV1P49821 464 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 ZNF543Q08ER8 600 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 SIGLEC14Q08ET2 396 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 CBX2Q14781 532 aaPredicted RBP11.32□□□□□ -0.6
SCFD1-215ENST00000555259 SMRP1Q8NCR6 262 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 SYTL5Q8TDW5 730 aaPredicted RBP11.32□□□□□ -0.6
SCFD1-215ENST00000555259 TBC1D5Q92609 795 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 ASIC4Q96FT7 647 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 RWDD3Q9Y3V2 267 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 MRVI1Q9Y6F6 885 aa11.32□□□□□ -0.6
SCFD1-215ENST00000555259 ORC4O43929 436 aa11.31□□□□□ -0.6
SCFD1-215ENST00000555259 PPFIA4O75335 1185 aa11.31□□□□□ -0.6
SCFD1-215ENST00000555259 CTSHP09668 335 aa11.31□□□□□ -0.6
SCFD1-215ENST00000555259 AVPR2P30518 371 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms