RNA–Protein interactions for RNA: ENST00000555252.5

MTHFD1-210, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 1 (best)

Gene MTHFD1, Length 2,053 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-210ENST00000555252 CCDC42Q96M95 316 aa11.82□□□□□ -0.52
MTHFD1-210ENST00000555252 GDAP1L1Q96MZ0 367 aa11.82□□□□□ -0.52
MTHFD1-210ENST00000555252 ZIM3Q96PE6 472 aa11.82□□□□□ -0.52
MTHFD1-210ENST00000555252 TUBGCP2Q9BSJ2 902 aa11.82□□□□□ -0.52
MTHFD1-210ENST00000555252 KBTBD4Q9NVX7 518 aa11.82□□□□□ -0.52
MTHFD1-210ENST00000555252 PLAGL2Q9UPG8 496 aa11.82□□□□□ -0.52
MTHFD1-210ENST00000555252 GOLGA6L7A0A1B0GV03 622 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 ESYT2A0FGR8 921 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 GRID2IPA4D2P6 1211 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 RCCD1A6NED2 376 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 ADAMTS3O15072 1205 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 FAM107AO95990 144 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 NAPAP54920 295 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 PTGISQ16647 500 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 INF2Q27J81 1249 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 WLSQ5T9L3 541 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 PRR5LQ6MZQ0 368 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 TYW1BQ6NUM6 668 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 TMC4Q7Z404 712 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 GIMAP7Q8NHV1 300 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 ZNF622Q969S3 477 aaKnown RBP eCLIP11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 ARL8AQ96BM9 186 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 SEC63Q9UGP8 760 aaKnown RBP11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 KIF13BQ9NQT8 1826 aa11.81□□□□□ -0.52
MTHFD1-210ENST00000555252 RASSF9O75901 435 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 UFL1O94874 794 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 OR52Z1P0C646 297 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 NR1D1P20393 614 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 AMPD3Q01432 767 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 TBC1D8BQ0IIM8 1120 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 PDCLQ13371 301 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 NAALADL2Q58DX5 795 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 FKBP15Q5T1M5 1219 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 LRIG3Q6UXM1 1119 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 FAM196AQ6ZSG2 479 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 TSEN2Q8NCE0 465 aaKnown RBP11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 RASGRP4Q8TDF6 673 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 ZNF473Q8WTR7 871 aaKnown RBP11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 IFIH1Q9BYX4 1025 aaKnown RBP11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 EDEM3Q9BZQ6 932 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 SAP30BPQ9UHR5 308 aaKnown RBP11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 GDAQ9Y2T3 454 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 GAKO14976 1311 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 SNED1Q8TER0 1413 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 MACROD2A1Z1Q3 448 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 CCNE1P24864 410 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 HMGB2P26583 209 aaKnown RBP11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 MDH1P40925 334 aaKnown RBP11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 GRIK5Q16478 980 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 CCDC96Q2M329 555 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 SLC35G1Q2M3R5 365 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 SLC4A8Q2Y0W8 1093 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 CFAP221Q4G0U5 840 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 C6orf89Q6UWU4 347 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 CABP7Q86V35 215 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 AMIGO3Q86WK7 504 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 ATP6V1G3Q96LB4 118 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 EHD4Q9H223 541 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 TMEM60Q9H2L4 133 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 KLC4Q9NSK0 619 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 AGPAT5Q9NUQ2 364 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 SAMM50Q9Y512 469 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 PCDHA13Q9Y5I0 950 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 FLT1P17948 1338 aa11.8□□□□□ -0.52
MTHFD1-210ENST00000555252 MYH4Q9Y623 1939 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 SMCO2A6NFE2 343 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 KLRC4O43908 158 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 HOXA10P31260 410 aaPredicted RBP11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 CDR1P51861 262 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 IFFO1Q0D2I5 559 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 CCDC40Q4G0X9 1142 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 NEK8Q86SG6 692 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 NLRP14Q86W24 1093 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 SLC44A5Q8NCS7 719 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 MYCBPAPQ8TBZ2 947 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 CRAMP1Q96RY5 1269 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 C7orf25Q9BPX7 421 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 LRWD1Q9UFC0 647 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 MCM8Q9UJA3 840 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 SUGT1Q9Y2Z0 365 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 DDX60LQ5H9U9 1706 aaKnown RBP11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 PLIN4Q96Q06 1357 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 RASSF10A6NK89 507 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 B4DLN1 442 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 RHBDL3P58872 404 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 SKIDA1Q1XH10 827 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 CSGALNACT2Q8N6G5 542 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 HDAC7Q8WUI4 952 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 P2RX5Q93086 422 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 ZKSCAN4Q969J2 545 aaPredicted RBP11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 RNPC3Q96LT9 517 aaKnown RBP11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 LUC7LQ9NQ29 371 aaKnown RBP11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 SUFUQ9UMX1 484 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 CAPN6Q9Y6Q1 641 aa11.79□□□□□ -0.52
MTHFD1-210ENST00000555252 SSU72P8A0A1W2PR75 194 aa11.78□□□□□ -0.52
MTHFD1-210ENST00000555252 TRIM49BA6NDI0 452 aa11.78□□□□□ -0.52
MTHFD1-210ENST00000555252 MYO1FO00160 1098 aa11.78□□□□□ -0.52
MTHFD1-210ENST00000555252 PES1O00541 588 aaKnown RBP11.78□□□□□ -0.52
MTHFD1-210ENST00000555252 CES2O00748 559 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms