RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 RBM12Q9NTZ6 932 aaKnown RBP10.5□□□□□ -0.73
SYNE2-213ENST00000554805 NARFQ9UHQ1 456 aa10.5□□□□□ -0.73
SYNE2-213ENST00000554805 RTCBQ9Y3I0 505 aaKnown RBP10.5□□□□□ -0.73
SYNE2-213ENST00000554805 BCORQ6W2J9 1755 aa10.5□□□□□ -0.73
SYNE2-213ENST00000554805 EPHB4P54760 987 aa10.5□□□□□ -0.73
SYNE2-213ENST00000554805 EHHADHQ08426 723 aa10.5□□□□□ -0.73
SYNE2-213ENST00000554805 HLTFQ14527 1009 aaKnown RBP eCLIP10.5□□□□□ -0.73
SYNE2-213ENST00000554805 FAM26FQ5R3K3 315 aa10.5□□□□□ -0.73
SYNE2-213ENST00000554805 KLHL7Q8IXQ5 586 aa10.5□□□□□ -0.73
SYNE2-213ENST00000554805 TBC1D5Q92609 795 aa10.5□□□□□ -0.73
SYNE2-213ENST00000554805 EPB41L5Q9HCM4 733 aa10.5□□□□□ -0.73
SYNE2-213ENST00000554805 PANK4Q9NVE7 773 aa10.5□□□□□ -0.73
SYNE2-213ENST00000554805 PACSIN2Q9UNF0 486 aaPredicted RBP10.5□□□□□ -0.73
SYNE2-213ENST00000554805 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.5□□□□□ -0.73
SYNE2-213ENST00000554805 AGPSO00116 658 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 MAGEA9P43362 315 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 LRRC63Q05C16 580 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 KLHL30Q0D2K2 578 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 IFT20Q8IY31 132 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 RPGRQ92834 1020 aaKnown RBP10.49□□□□□ -0.73
SYNE2-213ENST00000554805 MTMR8Q96EF0 704 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 CCDC43Q96MW1 224 aaKnown RBP10.49□□□□□ -0.73
SYNE2-213ENST00000554805 PURBQ96QR8 312 aaKnown RBP10.49□□□□□ -0.73
SYNE2-213ENST00000554805 NFU1Q9UMS0 254 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 SAMM50Q9Y512 469 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 COL4A3BPQ9Y5P4 624 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 MYH13Q9UKX3 1938 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 COL4A1P02462 1669 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 GOLGA8KD6RF30 607 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 C6orf229H3BNL8 230 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 RPS6KA5O75582 802 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 PALMO75781 387 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 HEXIM1O94992 359 aaKnown RBP10.49□□□□□ -0.73
SYNE2-213ENST00000554805 RFC4P35249 363 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 IRAK1P51617 712 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 FKBP3Q00688 224 aaKnown RBP10.49□□□□□ -0.73
SYNE2-213ENST00000554805 APBA1Q02410 837 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 MFSD14BQ5SR56 506 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 KCNK18Q7Z418 384 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 MAATS1Q7Z4T9 603 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 AENQ8WTP8 325 aaKnown RBP10.49□□□□□ -0.73
SYNE2-213ENST00000554805 KRT12Q99456 494 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 LEMD3Q9Y2U8 911 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 XIRP1Q702N8 1843 aaKnown RBP10.49□□□□□ -0.73
SYNE2-213ENST00000554805 SLC16A2P36021 539 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 LIG3P49916 1009 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 KIAA0753Q2KHM9 967 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 FAM83BQ5T0W9 1011 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 DPP8Q6V1X1 898 aaPredicted RBP10.49□□□□□ -0.73
SYNE2-213ENST00000554805 PPM1EQ8WY54 764 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 ARL8AQ96BM9 186 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 ZNF219Q9P2Y4 722 aaPredicted RBP10.49□□□□□ -0.73
SYNE2-213ENST00000554805 DDX25Q9UHL0 483 aaKnown RBP10.49□□□□□ -0.73
SYNE2-213ENST00000554805 SALL4Q9UJQ4 1053 aa10.49□□□□□ -0.73
SYNE2-213ENST00000554805 CACNA1SQ13698 1873 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 PLCG2P16885 1265 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 COASYQ13057 564 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 HAUS3Q68CZ6 603 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 CCDC65Q8IXS2 484 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 SH2D3CQ8N5H7 860 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 TSEN2Q8NCE0 465 aaKnown RBP10.48□□□□□ -0.73
SYNE2-213ENST00000554805 SPAG5Q96R06 1193 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 RIC8AQ9NPQ8 531 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 ADAMTS1Q9UHI8 967 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 KIAA1024Q9UPX6 916 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 TAF1P21675 1872 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 FAM170AA1A519 330 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 PPP4CP60510 307 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 PDCLQ13371 301 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 ASIC2Q16515 512 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 PLCH1Q4KWH8 1693 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 TCERG1LQ5VWI1 586 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 EMBQ6PCB8 327 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 C16orf86Q6ZW13 317 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 GPBP1Q86WP2 473 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 FAM133AQ8N9E0 248 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 ARAP2Q8WZ64 1704 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 TLR10Q9BXR5 811 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 FAM107BQ9H098 131 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 PCDHA12Q9UN75 941 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 THRAP3Q9Y2W1 955 aaKnown RBP10.48□□□□□ -0.73
SYNE2-213ENST00000554805 NPHP3-ACAD11A0A0J9YXS1 232 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 TMCO5BA8MYB1 307 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 E9PMD0 336 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 NDUFAB1O14561 156 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 RPS6KA4O75676 772 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 CARSP49589 748 aaKnown RBP10.48□□□□□ -0.73
SYNE2-213ENST00000554805 PAK2Q13177 524 aa10.48□□□□□ -0.73
SYNE2-213ENST00000554805 ZSCAN5CA6NGD5 496 aaPredicted RBP10.47□□□□□ -0.73
SYNE2-213ENST00000554805 HNRNPH3P31942 346 aaKnown RBP10.47□□□□□ -0.73
SYNE2-213ENST00000554805 CORO7P57737 925 aa10.47□□□□□ -0.73
SYNE2-213ENST00000554805 GRAPQ13588 217 aa10.47□□□□□ -0.73
SYNE2-213ENST00000554805 CNBD1Q8NA66 436 aa10.47□□□□□ -0.73
SYNE2-213ENST00000554805 GRAPLQ8TC17 118 aaPredicted RBP10.47□□□□□ -0.73
SYNE2-213ENST00000554805 BAP1Q92560 729 aa10.47□□□□□ -0.73
SYNE2-213ENST00000554805 GJD4Q96KN9 370 aaPredicted RBP10.47□□□□□ -0.73
SYNE2-213ENST00000554805 RTFDC1Q9BY42 306 aaPredicted RBP10.47□□□□□ -0.73
SYNE2-213ENST00000554805 CD209Q9NNX6 404 aa10.47□□□□□ -0.73
SYNE2-213ENST00000554805 TSKSQ9UJT2 592 aa10.47□□□□□ -0.73
SYNE2-213ENST00000554805 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms