RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 VAV3Q9UKW4 847 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 PPP1R9AQ9ULJ8 1098 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 POTEB3A0JP26 581 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 TRIM49BA6NDI0 452 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 POTECB2RU33 542 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 TEX33O43247 280 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 MED24O75448 989 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 VCAM1P19320 739 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 EEF1GP26641 437 aaKnown RBP29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 RPA1P27694 616 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 COPB1P53618 953 aaKnown RBP29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 NCAPH2Q6IBW4 605 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 POTEBQ6S5H4 581 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 DYMQ7RTS9 669 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 KIAA0895Q8NCT3 520 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 WRNIP1Q96S55 665 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 TANGO6Q9C0B7 1094 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 GGA3Q9NZ52 723 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 R3HCC1Q9Y3T6 440 aaKnown RBP29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 PLA2G4BP0C869 781 aa29.39■■■□□ 2.3
CCDC88C-205ENST00000553403 PTPRAP18433 802 aa29.39■■■□□ 2.3
CCDC88C-205ENST00000553403 BACE1P56817 501 aa29.39■■■□□ 2.3
CCDC88C-205ENST00000553403 DNAJC19Q96DA6 116 aa29.39■■■□□ 2.3
CCDC88C-205ENST00000553403 UIMC1Q96RL1 719 aa29.39■■■□□ 2.3
CCDC88C-205ENST00000553403 MAP3K20Q9NYL2 800 aaKnown RBP29.39■■■□□ 2.3
CCDC88C-205ENST00000553403 ITIH6Q6UXX5 1313 aa29.39■■■□□ 2.29
CCDC88C-205ENST00000553403 SPP2Q13103 211 aa29.38■■■□□ 2.29
CCDC88C-205ENST00000553403 IRF2BP1Q8IU81 584 aa29.38■■■□□ 2.29
CCDC88C-205ENST00000553403 ZNF280CQ8ND82 737 aa29.38■■■□□ 2.29
CCDC88C-205ENST00000553403 CYP2W1Q8TAV3 490 aa29.38■■■□□ 2.29
CCDC88C-205ENST00000553403 CLEC4DQ8WXI8 215 aa29.38■■■□□ 2.29
CCDC88C-205ENST00000553403 DUSP9Q99956 384 aaKnown RBP29.38■■■□□ 2.29
CCDC88C-205ENST00000553403 RPAP3Q9H6T3 665 aaPredicted RBP29.38■■■□□ 2.29
CCDC88C-205ENST00000553403 E9PMD0 336 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 FLOT1O75955 427 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 EPS15P42566 896 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 CATSPER3Q86XQ3 398 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 GUF1Q8N442 669 aaKnown RBP29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 C12orf42Q96LP6 360 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 POLR3CQ9BUI4 534 aaPredicted RBP29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 SRRTQ9BXP5 876 aaKnown RBP29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 PITPNM2Q9BZ72 1349 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 N4BP3O15049 544 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 ZBED4O75132 1171 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 HIRAP54198 1017 aaPredicted RBP29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 SETQ01105 290 aaPredicted RBP29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 PTPN21Q16825 1174 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 CEP55Q53EZ4 464 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 CENPPQ6IPU0 288 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 SLC5A5Q92911 643 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 SLC39A2Q9NP94 309 aa29.37■■■□□ 2.29
CCDC88C-205ENST00000553403 RPTORQ8N122 1335 aa29.36■■■□□ 2.29
CCDC88C-205ENST00000553403 SPATA31C1P0DKV0 1188 aa29.36■■■□□ 2.29
CCDC88C-205ENST00000553403 IDEP14735 1019 aa29.36■■■□□ 2.29
CCDC88C-205ENST00000553403 SUPT20HL1Q3ZLR7 823 aa29.36■■■□□ 2.29
CCDC88C-205ENST00000553403 NOL9Q5SY16 702 aaKnown RBP29.36■■■□□ 2.29
CCDC88C-205ENST00000553403 FOXR2Q6PJQ5 311 aa29.36■■■□□ 2.29
CCDC88C-205ENST00000553403 FAM114A1Q8IWE2 563 aa29.36■■■□□ 2.29
CCDC88C-205ENST00000553403 CCAR2Q8N163 923 aaKnown RBP29.36■■■□□ 2.29
CCDC88C-205ENST00000553403 MAGEC2Q9UBF1 373 aaPredicted RBP29.36■■■□□ 2.29
CCDC88C-205ENST00000553403 SBF1O95248 1867 aa29.36■■■□□ 2.29
CCDC88C-205ENST00000553403 C19orf81C9J6K1 198 aa29.35■■■□□ 2.29
CCDC88C-205ENST00000553403 ANKRD40Q6AI12 368 aa29.35■■■□□ 2.29
CCDC88C-205ENST00000553403 CSGALNACT2Q8N6G5 542 aa29.35■■■□□ 2.29
CCDC88C-205ENST00000553403 ZKSCAN4Q969J2 545 aaPredicted RBP29.35■■■□□ 2.29
CCDC88C-205ENST00000553403 KLRG1Q96E93 195 aa29.35■■■□□ 2.29
CCDC88C-205ENST00000553403 TAB2Q9NYJ8 693 aa29.35■■■□□ 2.29
CCDC88C-205ENST00000553403 CTDP1Q9Y5B0 961 aaPredicted RBP29.35■■■□□ 2.29
CCDC88C-205ENST00000553403 MEIS1O00470 390 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 PSMD10O75832 226 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 SLC12A3P55017 1021 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 COASYQ13057 564 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 PPP2R5CQ13362 524 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 DGKZQ13574 1117 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 PRAMEF18Q5VWM3 479 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 CCDC65Q8IXS2 484 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 TC2NQ8N9U0 490 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 RAVER2Q9HCJ3 691 aaKnown RBP29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 PANK4Q9NVE7 773 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 DNM3Q9UQ16 869 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 SSBP05455 408 aaKnown RBP eCLIP29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 CYP11B2P19099 503 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 OTOP1Q7RTM1 612 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 GPBP1Q86WP2 473 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 HPS3Q969F9 1004 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 VPS16Q9H269 839 aa29.34■■■□□ 2.29
CCDC88C-205ENST00000553403 POTEFA5A3E0 1075 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 NFIBO00712 420 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 KIF3CO14782 793 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 POTEIP0CG38 1075 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 ALAS1P13196 640 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 LRCH2Q5VUJ6 765 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 POTEGQ6S5H5 508 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 POTEEQ6S8J3 1075 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 KRT26Q7Z3Y9 468 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 PPFIBP1Q86W92 1011 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 PRIMPOLQ96LW4 560 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 EIF2AK1Q9BQI3 630 aaKnown RBP29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 SEMA6BQ9H3T3 888 aa29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP29.33■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms