RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 RRAGAQ7L523 313 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 RUBCNQ92622 972 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 TSGA10Q9BZW7 698 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 NDST4Q9H3R1 872 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 MMRN2Q9H8L6 949 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 ATP8A2Q9NTI2 1148 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 BLOC1S4Q9NUP1 217 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 BSDC1Q9NW68 430 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-212ENST00000552491 STIM2Q9P246 746 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 ARPP21Q9UBL0 812 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-212ENST00000552491 LOC102724428A0A0B4J2F2 783 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 BICDL2A1A5D9 508 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 PALM3A6NDB9 673 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-212ENST00000552491 ZNF233A6NK53 670 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 TLR2O60603 784 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 PRPHP41219 470 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 MAGEA1P43355 309 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 ATP1A2P50993 1020 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 SIK1P57059 783 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 LRRC41Q15345 812 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 C12orf60Q5U649 245 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 FBXW10Q5XX13 1052 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 TMED8Q6PL24 325 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-212ENST00000552491 LRRC55Q6ZSA7 311 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 DYMQ7RTS9 669 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 DGKHQ86XP1 1220 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 CCDC24Q8N4L8 307 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 PIK3R5Q8WYR1 880 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 IQCDQ96DY2 449 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 PNMA5Q96PV4 448 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 NUDT12Q9BQG2 462 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 TMEM47Q9BQJ4 181 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 FAM107BQ9H098 131 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 HYOU1Q9Y4L1 999 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 EBAG9O00559 213 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 PJA2O43164 708 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 AKR1B10O60218 316 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 USO1O60763 962 aaKnown RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 EPB41P11171 864 aaKnown RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 DNA2P51530 1060 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 GTF2A1P52655 376 aaPredicted RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 EPHB4P54760 987 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 SKOR1P84550 965 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 SF3B3Q15393 1217 aaKnown RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 KCNV1Q6PIU1 500 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 KCNK18Q7Z418 384 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 FAM114A1Q8IWE2 563 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 ANKS1AQ92625 1134 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 CAVIN3Q969G5 261 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 ZMYND12Q9H0C1 365 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 CUEDC2Q9H467 287 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 MAGEF1Q9HAY2 307 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 TCP11L1Q9NUJ3 509 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 TMEM260Q9NX78 707 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 NFU1Q9UMS0 254 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 PACSIN2Q9UNF0 486 aaPredicted RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 CCDC88AQ3V6T2 1871 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 KLRF2D3W0D1 207 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 GOLGA8KD6RF30 607 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 LAD1O00515 517 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 NOL4O94818 638 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 TCP1P17987 556 aaKnown RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 PPP1R2P41236 205 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 KCNQ4P56696 695 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 RNASE9P60153 205 aaKnown RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 PPARDQ03181 441 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 PDXDC1Q6P996 788 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 EMBQ6PCB8 327 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 GBP6Q6ZN66 633 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 BICDL1Q6ZP65 573 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 IQCKQ8N0W5 287 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 TBCKQ8TEA7 893 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 SH3RF3Q8TEJ3 882 aaPredicted RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 CCDC47Q96A33 483 aaKnown RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 RNPC3Q96LT9 517 aaKnown RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 AK8Q96MA6 479 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 CCDC43Q96MW1 224 aaKnown RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 FGFBP2Q9BYJ0 223 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 DEF6Q9H4E7 631 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 KANSL2Q9H9L4 492 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 NLRC4Q9NPP4 1024 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 GDF3Q9NR23 364 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 BIN2Q9UBW5 565 aaPredicted RBP6□□□□□ -1.45
LIMA1-212ENST00000552491 STX8Q9UNK0 236 aa6□□□□□ -1.45
LIMA1-212ENST00000552491 SMCO2A6NFE2 343 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 SLC37A4O43826 429 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 ERLIN2O94905 339 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 FTCDO95954 541 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 GUCY2CP25092 1073 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 TNFRSF8P28908 595 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 HIBADHP31937 336 aaKnown RBP5.99□□□□□ -1.45
LIMA1-212ENST00000552491 TXKP42681 527 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 GUCY2FP51841 1108 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 NAPAP54920 295 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 GUCY1A3Q02108 690 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 NNTQ13423 1086 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 SF3B2Q13435 895 aaKnown RBP5.99□□□□□ -1.45
LIMA1-212ENST00000552491 DIXDC1Q155Q3 683 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 ECM1Q16610 540 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 MAN2A1Q16706 1144 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms