RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 GALNT18Q6P9A2 607 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 ZNF655Q8N720 491 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-206ENST00000550611 FOXP3Q9BZS1 431 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 TNFRSF10DQ9UBN6 386 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 TCFL5Q9UL49 500 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 CORINQ9Y5Q5 1042 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 TUBGCP6Q96RT7 1819 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 PDE4DIPQ5VU43 2346 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 USP31Q70CQ4 1352 aa5.07□□□□□ -1.6
LIMA1-206ENST00000550611 ITSN1Q15811 1721 aa5.07□□□□□ -1.6
LIMA1-206ENST00000550611 WTIPA6NIX2 430 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-206ENST00000550611 IL2RBP14784 551 aa5.07□□□□□ -1.6
LIMA1-206ENST00000550611 TFE3P19532 575 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-206ENST00000550611 RAB3GAP1Q15042 981 aa5.07□□□□□ -1.6
LIMA1-206ENST00000550611 DIEXFQ68CQ4 756 aaKnown RBP5.07□□□□□ -1.6
LIMA1-206ENST00000550611 RETREG2Q8NC44 543 aa5.07□□□□□ -1.6
LIMA1-206ENST00000550611 TCTN2Q96GX1 697 aa5.07□□□□□ -1.6
LIMA1-206ENST00000550611 CCDC74BQ96LY2 380 aa5.07□□□□□ -1.6
LIMA1-206ENST00000550611 BIN2Q9UBW5 565 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-206ENST00000550611 EVC2Q86UK5 1308 aa5.06□□□□□ -1.6
LIMA1-206ENST00000550611 FADS2P1A8MWK0 482 aa5.06□□□□□ -1.6
LIMA1-206ENST00000550611 OVOL3O00110 214 aa5.06□□□□□ -1.6
LIMA1-206ENST00000550611 CCDC84Q86UT8 332 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-206ENST00000550611 SLC16A11Q8NCK7 471 aa5.06□□□□□ -1.6
LIMA1-206ENST00000550611 FCRL2Q96LA5 508 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-206ENST00000550611 SORCS2Q96PQ0 1159 aa5.06□□□□□ -1.6
LIMA1-206ENST00000550611 TNFRSF12AQ9NP84 129 aa5.06□□□□□ -1.6
LIMA1-206ENST00000550611 USP40Q9NVE5 1235 aa5.06□□□□□ -1.6
LIMA1-206ENST00000550611 RNF181Q9P0P0 153 aa5.06□□□□□ -1.6
LIMA1-206ENST00000550611 TAF6LQ9Y6J9 622 aa5.06□□□□□ -1.6
LIMA1-206ENST00000550611 NFAT5O94916 1531 aa5.06□□□□□ -1.6
LIMA1-206ENST00000550611 TRPM1Q7Z4N2 1603 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 KDM2BQ8NHM5 1336 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 BTAF1O14981 1849 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 SSU72P8A0A1W2PR75 194 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 ITGB3P05106 788 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 RLBP1P12271 317 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 DPEP1P16444 411 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 BBS9Q3SYG4 887 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 HSF5Q4G112 596 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-206ENST00000550611 VWA3BQ502W6 1294 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 LIPIQ6XZB0 460 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 C1QTNF3Q9BXJ4 246 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 SMPD4Q9NXE4 827 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 CCNL1Q9UK58 526 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-206ENST00000550611 ABCC6O95255 1503 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 PIK3C2AO00443 1686 aa5.05□□□□□ -1.6
LIMA1-206ENST00000550611 NSD2O96028 1365 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 SBNO2Q9Y2G9 1366 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 AKAP12Q02952 1782 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 SZT2Q5T011 3432 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 NUDT19A8MXV4 375 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 VEGFAP15692 232 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-206ENST00000550611 PFKLP17858 780 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 ENDOUP21128 410 aaKnown RBP5.04□□□□□ -1.6
LIMA1-206ENST00000550611 KCNA3P22001 575 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 NCKAP1LP55160 1127 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 SOX10P56693 466 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 TRIM26Q12899 539 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-206ENST00000550611 TARBP2Q15633 366 aaKnown RBP5.04□□□□□ -1.6
LIMA1-206ENST00000550611 NT5DC1Q5TFE4 455 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 FERMT3Q86UX7 667 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 NME9Q86XW9 330 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 AEBP1Q8IUX7 1158 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 ZSCAN29Q8IWY8 852 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-206ENST00000550611 IP6K1Q92551 441 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 PODXL2Q9NZ53 605 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 ACSL6Q9UKU0 697 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 GNEQ9Y223 722 aaKnown RBP5.04□□□□□ -1.6
LIMA1-206ENST00000550611 KTN1Q86UP2 1357 aaKnown RBP5.04□□□□□ -1.6
LIMA1-206ENST00000550611 ANKRD36BQ8N2N9 1353 aa5.04□□□□□ -1.6
LIMA1-206ENST00000550611 NHSQ6T4R5 1651 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 CD163L1Q9NR16 1453 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 SYPP08247 313 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 MSL3P1P0C860 447 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 EIF4BP23588 611 aaKnown RBP5.03□□□□□ -1.6
LIMA1-206ENST00000550611 LIMS1P48059 325 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 MAPKAPK2P49137 400 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 RNF4P78317 190 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 CYP4F8P98187 520 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 KIR3DS1Q14943 382 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 NR1I3Q14994 352 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 MAP3K11Q16584 847 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 PLEKHN1Q494U1 663 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-206ENST00000550611 CPZQ66K79 652 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 ZPBP2Q6X784 338 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 RPTNQ6XPR3 784 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 SLCO6A1Q86UG4 719 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.03□□□□□ -1.6
LIMA1-206ENST00000550611 JARID2Q92833 1246 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-206ENST00000550611 KRTAP3-1Q9BYR8 98 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 GPR55Q9Y2T6 319 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-206ENST00000550611 CNTNAP1P78357 1384 aa5.03□□□□□ -1.6
LIMA1-206ENST00000550611 N4BP2Q86UW6 1770 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-206ENST00000550611 A0A1W2PQ45 241 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-206ENST00000550611 A0A1W2PQY0 241 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 SH3D21A4FU49 640 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 CHURC1-FNTBB4DL54 471 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 FKTNO75072 461 aa5.02□□□□□ -1.61
LIMA1-206ENST00000550611 FSHBP01225 129 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms