RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 NDST4Q9H3R1 872 aa16.18■□□□□ 0.18
HOXC11-202ENST00000546378 PPP1R1BQ9UD71 204 aaPredicted RBP16.18■□□□□ 0.18
HOXC11-202ENST00000546378 CNTNAP5Q8WYK1 1306 aa16.17■□□□□ 0.18
HOXC11-202ENST00000546378 SF3B2Q13435 895 aaKnown RBP16.17■□□□□ 0.18
HOXC11-202ENST00000546378 CT47A1Q5JQC4 288 aaPredicted RBP16.17■□□□□ 0.18
HOXC11-202ENST00000546378 PNMA8AQ86V59 439 aaPredicted RBP16.17■□□□□ 0.18
HOXC11-202ENST00000546378 CELF4Q9BZC1 486 aaKnown RBP16.17■□□□□ 0.18
HOXC11-202ENST00000546378 STIM2Q9P246 746 aa16.17■□□□□ 0.18
HOXC11-202ENST00000546378 SEC63Q9UGP8 760 aaKnown RBP16.17■□□□□ 0.18
HOXC11-202ENST00000546378 SKAP2O75563 359 aaPredicted RBP16.17■□□□□ 0.18
HOXC11-202ENST00000546378 KIF5BP33176 963 aa16.17■□□□□ 0.18
HOXC11-202ENST00000546378 MRRFQ96E11 262 aaKnown RBP16.17■□□□□ 0.18
HOXC11-202ENST00000546378 DUSP9Q99956 384 aaKnown RBP16.17■□□□□ 0.18
HOXC11-202ENST00000546378 IKZF4Q9H2S9 585 aa16.17■□□□□ 0.18
HOXC11-202ENST00000546378 DCP1AQ9NPI6 582 aaPredicted RBP16.17■□□□□ 0.18
HOXC11-202ENST00000546378 CAPN11Q9UMQ6 739 aa16.17■□□□□ 0.18
HOXC11-202ENST00000546378 SNX12Q9UMY4 172 aa16.17■□□□□ 0.18
HOXC11-202ENST00000546378 MYH13Q9UKX3 1938 aa16.17■□□□□ 0.18
HOXC11-202ENST00000546378 CYP4A11Q02928 519 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 ELMO3Q96BJ8 720 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 STK36Q9NRP7 1315 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 FAM196BA6NMK8 535 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 PPP1R12BO60237 982 aaPredicted RBP16.16■□□□□ 0.18
HOXC11-202ENST00000546378 MYBL1P10243 752 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 ADRA2BP18089 450 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 GIMAP7Q8NHV1 300 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 PLAAQ9Y263 795 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 TM4SF1P30408 202 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 MAP2K2P36507 400 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 ZBED6P86452 979 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 ZNF211Q13398 564 aaPredicted RBP16.16■□□□□ 0.18
HOXC11-202ENST00000546378 NPY5RQ15761 445 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 HERC4Q5GLZ8 1057 aaPredicted RBP16.16■□□□□ 0.18
HOXC11-202ENST00000546378 CREG2Q8IUH2 290 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 EHBP1Q8NDI1 1231 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 ARPP21Q9UBL0 812 aaPredicted RBP16.16■□□□□ 0.18
HOXC11-202ENST00000546378 RGS17Q9UGC6 210 aaPredicted RBP16.16■□□□□ 0.18
HOXC11-202ENST00000546378 CD2APQ9Y5K6 639 aa16.16■□□□□ 0.18
HOXC11-202ENST00000546378 A0A087WUV0 522 aaPredicted RBP16.15■□□□□ 0.18
HOXC11-202ENST00000546378 PHF20L1A8MW92 1017 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 OPA1O60313 960 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 PRPF6O94906 941 aaKnown RBP16.15■□□□□ 0.18
HOXC11-202ENST00000546378 KLRC1P26715 233 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 CTNNA1P35221 906 aaKnown RBP16.15■□□□□ 0.18
HOXC11-202ENST00000546378 PPFIA1Q13136 1202 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 GRAPQ13588 217 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 CCDC38Q502W7 563 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 GJB7Q6PEY0 223 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 GBP6Q6ZN66 633 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 SV2BQ7L1I2 683 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 SH3RF1Q7Z6J0 888 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 CPLX4Q7Z7G2 160 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 PHLDB2Q86SQ0 1253 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 EFCAB13Q8IY85 973 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 TRIM58Q8NG06 486 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 GRAPLQ8TC17 118 aaPredicted RBP16.15■□□□□ 0.18
HOXC11-202ENST00000546378 NOX5Q96PH1 765 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 PDGFDQ9GZP0 370 aaPredicted RBP16.15■□□□□ 0.18
HOXC11-202ENST00000546378 ANKRD2Q9GZV1 360 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 BAIAP2L1Q9UHR4 511 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 CLIC2O15247 247 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 KLHL30Q0D2K2 578 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 SH3RF3Q8TEJ3 882 aaPredicted RBP16.15■□□□□ 0.18
HOXC11-202ENST00000546378 SEMA6BQ9H3T3 888 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 NOVA2Q9UNW9 492 aaKnown RBP16.15■□□□□ 0.18
HOXC11-202ENST00000546378 BTAF1O14981 1849 aa16.15■□□□□ 0.18
HOXC11-202ENST00000546378 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.15■□□□□ 0.18
HOXC11-202ENST00000546378 FAM237AA0A1B0GTK4 181 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 PSMD14O00487 310 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 NR1D1P20393 614 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 TRIM14Q14142 442 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 GRIK5Q16478 980 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 SPATA20Q8TB22 786 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 FGFBP2Q9BYJ0 223 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 TRIM9Q9C026 710 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 BCAS3Q9H6U6 928 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 SLC24A3Q9HC58 644 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 PKD2L1Q9P0L9 805 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 ATP8A1Q9Y2Q0 1164 aa16.14■□□□□ 0.18
HOXC11-202ENST00000546378 KRT13P13646 458 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 MCM3P25205 808 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 KRT71Q3SY84 523 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 TTI2Q6NXR4 508 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 AMACRQ9UHK6 382 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 PCDHA6Q9UN73 950 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 PCDHA8Q9Y5H6 950 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 STAT3P40763 770 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 OTUD6AQ7L8S5 288 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 NLGN1Q8N2Q7 840 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 RBM17Q96I25 401 aaKnown RBP16.14■□□□□ 0.17
HOXC11-202ENST00000546378 RBM28Q9NW13 759 aaKnown RBP16.14■□□□□ 0.17
HOXC11-202ENST00000546378 PSD3Q9NYI0 1048 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 PCDHA4Q9UN74 947 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 PCDHB13Q9Y5F0 798 aa16.14■□□□□ 0.17
HOXC11-202ENST00000546378 RASSF10A6NK89 507 aa16.13■□□□□ 0.17
HOXC11-202ENST00000546378 E9PMD0 336 aa16.13■□□□□ 0.17
HOXC11-202ENST00000546378 EIF3HO15372 352 aaKnown RBP eCLIP16.13■□□□□ 0.17
HOXC11-202ENST00000546378 OR52Z1P0C646 297 aa16.13■□□□□ 0.17
HOXC11-202ENST00000546378 PDHBP11177 359 aa16.13■□□□□ 0.17
HOXC11-202ENST00000546378 GPSM2P81274 684 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms