RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 PBX1P40424 430 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 UBXN1Q04323 297 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 PABPC4Q13310 644 aaKnown RBP eCLIP16.21■□□□□ 0.19
CLIP1-216ENST00000541410 MTF1Q14872 753 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 PTPN14Q15678 1187 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 UPF1Q92900 1129 aaKnown RBP eCLIP16.21■□□□□ 0.19
CLIP1-216ENST00000541410 PPP1R13BQ96KQ4 1090 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 RGL1Q9NZL6 768 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 PKD2L1Q9P0L9 805 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 LTBP3Q9NS15 1303 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 IGLV3-22A0A075B6J6 115 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 NRDCO43847 1150 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 ALAS1P13196 640 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 PRKCSHP14314 528 aaPredicted RBP16.21■□□□□ 0.19
CLIP1-216ENST00000541410 GPBP1Q86WP2 473 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 DNAJC19Q96DA6 116 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 DHTKD1Q96HY7 919 aaPredicted RBP16.21■□□□□ 0.19
CLIP1-216ENST00000541410 WNK4Q96J92 1243 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 WRNIP1Q96S55 665 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 GGA3Q9NZ52 723 aa16.21■□□□□ 0.19
CLIP1-216ENST00000541410 MRPL11Q9Y3B7 192 aaKnown RBP16.21■□□□□ 0.19
CLIP1-216ENST00000541410 ABCB11O95342 1321 aa16.21■□□□□ 0.18
CLIP1-216ENST00000541410 RIOK3O14730 519 aaKnown RBP16.2■□□□□ 0.18
CLIP1-216ENST00000541410 CTNND1O60716 968 aaKnown RBP16.2■□□□□ 0.18
CLIP1-216ENST00000541410 VCAM1P19320 739 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 CCNE1P24864 410 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 FXR1P51114 621 aaKnown RBP eCLIP16.2■□□□□ 0.18
CLIP1-216ENST00000541410 MOXD1Q6UVY6 613 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 PPFIBP1Q86W92 1011 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 ANKRD20A12PQ8NF67 263 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 SLF1Q9BQI6 1058 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 DESI2Q9BSY9 194 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 EMILIN3Q9NT22 766 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 COL20A1Q9P218 1284 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 AKR1B15C9JRZ8 316 aaPredicted RBP16.2■□□□□ 0.18
CLIP1-216ENST00000541410 GYPCP04921 128 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 SPATA31C1P0DKV0 1188 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 HIRAP54198 1017 aaPredicted RBP16.2■□□□□ 0.18
CLIP1-216ENST00000541410 COASYQ13057 564 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 NT5C3AQ9H0P0 336 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 BCAS3Q9H6U6 928 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 PANK4Q9NVE7 773 aa16.2■□□□□ 0.18
CLIP1-216ENST00000541410 KDM3AQ9Y4C1 1321 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 LRRC10BA6NIK2 292 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 SOWAHDA6NJG2 315 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 B4DLN1 442 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 CIITAP33076 1130 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 MUM1L1Q5H9M0 696 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 TOGARAM2Q6ZUX3 1019 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 NYAP1Q6ZVC0 841 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 PRPF38AQ8NAV1 312 aaKnown RBP16.19■□□□□ 0.18
CLIP1-216ENST00000541410 PURBQ96QR8 312 aaKnown RBP16.19■□□□□ 0.18
CLIP1-216ENST00000541410 RPAP3Q9H6T3 665 aaPredicted RBP16.19■□□□□ 0.18
CLIP1-216ENST00000541410 VAV3Q9UKW4 847 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 PVALEFA0A1B0GWK0 134 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 DDX39AO00148 427 aaKnown RBP16.19■□□□□ 0.18
CLIP1-216ENST00000541410 ZBTB39O15060 712 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 KRT18P05783 430 aaKnown RBP16.19■□□□□ 0.18
CLIP1-216ENST00000541410 ARP10275 920 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 SPAG1Q07617 926 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 CTTNQ14247 550 aaKnown RBP16.19■□□□□ 0.18
CLIP1-216ENST00000541410 HYIQ5T013 277 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 CNOT6LQ96LI5 555 aaKnown RBP16.19■□□□□ 0.18
CLIP1-216ENST00000541410 KIAA1683Q9H0B3 1180 aa16.19■□□□□ 0.18
CLIP1-216ENST00000541410 MAGEC2Q9UBF1 373 aaPredicted RBP16.19■□□□□ 0.18
CLIP1-216ENST00000541410 WDR46O15213 610 aaKnown RBP16.18■□□□□ 0.18
CLIP1-216ENST00000541410 ICAM1P05362 532 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 CYP3A4P08684 503 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 CYP11B2P19099 503 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 ARSHQ5FYA8 562 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 NELFCDQ8IXH7 590 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 CCDC112Q8NEF3 446 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 IL31RAQ8NI17 732 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 PIGOQ8TEQ8 1089 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 TUBGCP2Q9BSJ2 902 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 THAP9Q9H5L6 903 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 GPRC5DQ9NZD1 345 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 BICDL2A1A5D9 508 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 PLA2G6O60733 806 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 KLK7P49862 253 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 LRCH2Q5VUJ6 765 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 HAUS3Q68CZ6 603 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 MCTP2Q6DN12 878 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 MYRIPQ8NFW9 859 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 FAM20AQ96MK3 541 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 EIF2AK1Q9BQI3 630 aaKnown RBP16.18■□□□□ 0.18
CLIP1-216ENST00000541410 ZHX2Q9Y6X8 837 aa16.18■□□□□ 0.18
CLIP1-216ENST00000541410 TBX3O15119 743 aa16.17■□□□□ 0.18
CLIP1-216ENST00000541410 DDNO94850 711 aaPredicted RBP16.17■□□□□ 0.18
CLIP1-216ENST00000541410 MTIF2P46199 727 aaKnown RBP16.17■□□□□ 0.18
CLIP1-216ENST00000541410 HMGCS2P54868 508 aa16.17■□□□□ 0.18
CLIP1-216ENST00000541410 SLC12A3P55017 1021 aa16.17■□□□□ 0.18
CLIP1-216ENST00000541410 RBM10P98175 930 aaKnown RBP16.17■□□□□ 0.18
CLIP1-216ENST00000541410 HERC4Q5GLZ8 1057 aaPredicted RBP16.17■□□□□ 0.18
CLIP1-216ENST00000541410 CLEC4DQ8WXI8 215 aa16.17■□□□□ 0.18
CLIP1-216ENST00000541410 PRIMPOLQ96LW4 560 aa16.17■□□□□ 0.18
CLIP1-216ENST00000541410 FHDC1Q9C0D6 1143 aaPredicted RBP16.17■□□□□ 0.18
CLIP1-216ENST00000541410 RPA1P27694 616 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 EHHADHQ08426 723 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 CEP55Q53EZ4 464 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms