RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 GOLGA8HP0CJ92 632 aa13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 HIC1Q14526 733 aa13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 PLEKHG4Q58EX7 1191 aa13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 TCEAL5Q5H9L2 206 aa13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 ARHGEF16Q5VV41 709 aa13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 EP400NLQ6ZTU2 488 aa13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 SERINC5Q86VE9 423 aa13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 ADHFE1Q8IWW8 467 aa13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 TMEM192Q8IY95 271 aa13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 OTUD7AQ8TE49 926 aaPredicted RBP13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 TOP1MTQ969P6 601 aa13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 RCAN3Q9UKA8 241 aa13.61□□□□□ -0.23
CLSTN3-209ENST00000539982 RBAK-RBAKDNI3L0D1 243 aa13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 NCK2O43639 380 aa13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 NR3C2P08235 984 aa13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 ZNF286BP0CG31 522 aa13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 PCP11498 1178 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 HOXD8P13378 290 aaPredicted RBP13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 MX1P20591 662 aa13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 THPOP40225 353 aa13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 MFSD14AQ96MC6 490 aa13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 YME1L1Q96TA2 773 aa13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 CPVLQ9H3G5 476 aa13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 NSUN3Q9H649 340 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 MRVI1Q9Y6F6 885 aa13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 KIAA1217Q5T5P2 1943 aa13.6□□□□□ -0.23
CLSTN3-209ENST00000539982 EIF2AK2P19525 551 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 CDC37Q16543 378 aaPredicted RBP13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 MYSM1Q5VVJ2 828 aa13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 KCNV1Q6PIU1 500 aa13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 MFSD6Q6ZSS7 791 aa13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 HFE2Q6ZVN8 426 aa13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 FBXO11Q86XK2 927 aa13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 DGKHQ86XP1 1220 aa13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 SEPT8Q92599 483 aa13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 EVI5LQ96CN4 794 aa13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 CLDND1Q9NY35 253 aa13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 MRPL11Q9Y3B7 192 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 MICAL3Q7RTP6 2002 aa13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 WDFY4Q6ZS81 3184 aa13.59□□□□□ -0.23
CLSTN3-209ENST00000539982 UPP2O95045 317 aa13.58□□□□□ -0.24
CLSTN3-209ENST00000539982 HSPD1P10809 573 aaKnown RBP13.58□□□□□ -0.24
CLSTN3-209ENST00000539982 IRS1P35568 1242 aa13.58□□□□□ -0.24
CLSTN3-209ENST00000539982 LTBRP36941 435 aa13.58□□□□□ -0.24
CLSTN3-209ENST00000539982 HSDL1Q3SXM5 330 aa13.58□□□□□ -0.24
CLSTN3-209ENST00000539982 MCMDC2Q4G0Z9 681 aa13.58□□□□□ -0.24
CLSTN3-209ENST00000539982 CELF3Q5SZQ8 465 aaKnown RBP13.58□□□□□ -0.24
CLSTN3-209ENST00000539982 ADGRF4Q8IZF3 695 aa13.58□□□□□ -0.24
CLSTN3-209ENST00000539982 SPATA33Q96N06 139 aa13.58□□□□□ -0.24
CLSTN3-209ENST00000539982 C16orf70Q9BSU1 422 aa13.58□□□□□ -0.24
CLSTN3-209ENST00000539982 PXMP2Q9NR77 195 aa13.58□□□□□ -0.24
CLSTN3-209ENST00000539982 MYH7BA7E2Y1 1941 aa13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 C17orf102A2RUQ5 167 aa13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 RGS20O76081 388 aa13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 HAND2P61296 217 aa13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 SMAD2Q15796 467 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 CTC1Q2NKJ3 1217 aa13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 QRICH1Q2TAL8 776 aa13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 HERC4Q5GLZ8 1057 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 ESR2Q92731 530 aa13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 ATP6V0A1Q93050 837 aa13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 POP1Q99575 1024 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 ZKSCAN3Q9BRR0 538 aa13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 ZMYM6O95789 1325 aa13.57□□□□□ -0.24
CLSTN3-209ENST00000539982 C5orf67F2Z3F1 127 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 H3BRB1 525 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 CAND2O75155 1236 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 GGPS1O95749 300 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 CFBP00751 764 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 RB1P06400 928 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 TGFB3P10600 412 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 HOXC8P31273 242 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 CCDC178Q5BJE1 867 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 RPAINQ86UA6 219 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 VSIG10LQ86VR7 867 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 TICAM2Q86XR7 235 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 PNMA1Q8ND90 353 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 ANKS1AQ92625 1134 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 IL17RAQ96F46 866 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 SNX27Q96L92 541 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 FAM227BQ96M60 508 aa13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 IFIH1Q9BYX4 1025 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 RNF41Q9H4P4 317 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 TUT1Q9H6E5 874 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 MAP3K20Q9NYL2 800 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-209ENST00000539982 TRIOO75962 3097 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 ZNF318Q5VUA4 2279 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 A0A0D9SFI3 127 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 TREHO43280 583 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 MBTPS2O43462 519 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 SORBS3O60504 671 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 MYCLP12524 364 aaPredicted RBP13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 NT5C2P49902 561 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 HSD17B4P51659 736 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 SP2Q02086 613 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 GHRHRQ02643 423 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 ASPRV1Q53RT3 343 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 STOX1Q6ZVD7 989 aa13.55□□□□□ -0.24
CLSTN3-209ENST00000539982 RNF135Q8IUD6 432 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms