RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 SRBD1Q8N5C6 995 aaKnown RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 MIGA1Q8NAN2 632 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 AFAP1L1Q8TED9 768 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 SDR42E1Q8WUS8 393 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 EMID1Q96A84 441 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 LRRC27Q9C0I9 530 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 NUCKS1Q9H1E3 243 aaKnown RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 ZNF287Q9HBT7 754 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 INCENPQ9NQS7 918 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 TMEM51Q9NW97 253 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 TAB2Q9NYJ8 693 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 VPS18Q9P253 973 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 PUF60Q9UHX1 559 aaKnown RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 FEZ2Q9UHY8 353 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 FAM184BQ9ULE4 1060 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 ATP6V0A2Q9Y487 856 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 JRKLQ9Y4A0 524 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 LTBP3Q9NS15 1303 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 ESYT2A0FGR8 921 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 SRRM3A6NNA2 597 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 POTECB2RU33 542 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 KLRC4O43908 158 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 PRPF6O94906 941 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 TRIM21P19474 475 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 ATP2B1P20020 1258 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 UBA7P41226 1012 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 KIF5AQ12840 1032 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 SEPT2Q15019 361 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 NAALADL2Q58DX5 795 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 FKBP15Q5T1M5 1219 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 EMBQ6PCB8 327 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 WDR59Q6PJI9 974 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 KRT25Q7Z3Z0 450 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 FBXO33Q7Z6M2 555 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 ADGRA1Q86SQ6 560 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 KIAA1328Q86T90 577 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 ZNF598Q86UK7 904 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 SPATS2Q86XZ4 545 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 SP8Q8IXZ3 490 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 SMYD4Q8IYR2 804 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 RTKN2Q8IZC4 609 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 CCDC82Q8N4S0 544 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 RNF10Q8N5U6 811 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 EIF1ADQ8N9N8 165 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 C1orf131Q8NDD1 294 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 HELBQ8NG08 1087 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 CPLX3Q8WVH0 158 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 C7orf43Q8WVR3 580 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 CELF1Q92879 486 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 P2RX5Q93086 422 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 JAKMIP2Q96AA8 810 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 NSUN4Q96CB9 384 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 TRIM47Q96LD4 638 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 ALS2CR12Q96Q35 445 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 C7orf25Q9BPX7 421 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 SLF1Q9BQI6 1058 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 CRACR2AQ9BSW2 395 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 SPZ1Q9BXG8 430 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 ANKRD2Q9GZV1 360 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 VPS16Q9H269 839 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 KAT14Q9H8E8 782 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 DCP1AQ9NPI6 582 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 LUC7LQ9NQ29 371 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 BARHL2Q9NY43 387 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 STK17AQ9UEE5 414 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 HPCAL4Q9UM19 191 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 PLAGL2Q9UPG8 496 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 FAN1Q9Y2M0 1017 aa7.04□□□□□ -1.28
SYNE1-233ENST00000535896 REXO2Q9Y3B8 237 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 RRP15Q9Y3B9 282 aaKnown RBP7.04□□□□□ -1.28
SYNE1-233ENST00000535896 FLT1P17948 1338 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 FER1L6Q2WGJ9 1857 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 COL4A1P02462 1669 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 PVALEFA0A1B0GWK0 134 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 SSU72P8A0A1W2PR75 194 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 TSPY2A6NKD2 308 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 GOLGA8KD6RF30 607 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 PJA2O43164 708 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 C21orf2O43822 256 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 ZEB2O60315 1214 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 TACC1O75410 805 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 PRDM1O75626 825 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 CPP00450 1065 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 RHOXF2BP0C7M4 288 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 EPB41P11171 864 aaKnown RBP7.03□□□□□ -1.28
SYNE1-233ENST00000535896 YBX3P16989 372 aaKnown RBP eCLIP7.03□□□□□ -1.28
SYNE1-233ENST00000535896 GNA11P29992 359 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 MCM7P33993 719 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 MAGEA9P43362 315 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 EPHB4P54760 987 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 HERVK_113P62684 666 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 LRRC63Q05C16 580 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 PPFIA1Q13136 1202 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 SPA17Q15506 151 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 BLOC1S3Q6QNY0 202 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 EFCAB13Q8IY85 973 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 CMTR1Q8N1G2 835 aaKnown RBP7.03□□□□□ -1.28
SYNE1-233ENST00000535896 CSGALNACT2Q8N6G5 542 aa7.03□□□□□ -1.28
SYNE1-233ENST00000535896 NOA1Q8NC60 698 aaKnown RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms