RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 LMCD1Q9NZU5 365 aa19.72■□□□□ 0.75
SFSWAP-203ENST00000535236 ABT1Q9ULW3 272 aaKnown RBP19.72■□□□□ 0.75
SFSWAP-203ENST00000535236 COBLO75128 1261 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 PSAPP07602 524 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 GUCY2DQ02846 1103 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 DNAAF3Q8N9W5 541 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 FAM8A1Q9UBU6 413 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 NXF1Q9UBU9 619 aaKnown RBP19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 MCF2LO15068 1137 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 FAN1Q9Y2M0 1017 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 PZPP20742 1482 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 A0A1W2PQ27 194 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 A0A1W2PQ64 194 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 A0A1W2PQD8 194 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 KRT1P04264 644 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 KRT27Q7Z3Y8 459 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 SIX6OS1Q8N1H7 587 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 SPDYE1Q8NFV5 336 aaPredicted RBP19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 MRFAP1L1Q96HT8 127 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 CLIC2O15247 247 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 EEF1GP26641 437 aaKnown RBP19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 CASP14P31944 242 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 SLC39A14Q15043 492 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 PI4KBQ9UBF8 816 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 RGS12O14924 1447 aa19.71■□□□□ 0.75
SFSWAP-203ENST00000535236 EFCAB13Q8IY85 973 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 DNAJC24Q6P3W2 148 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 PDZD8Q8NEN9 1154 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 MAP4K1Q92918 833 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 TMEM94Q12767 1356 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 EFCAB8A8MWE9 144 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 MEIS1O00470 390 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 DALRD3Q5D0E6 543 aaKnown RBP19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 GCNAQ96QF7 691 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 HIP1RO75146 1068 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 MKRN3Q13064 507 aaKnown RBP19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 THOC5Q13769 683 aaKnown RBP19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 GBP5Q96PP8 586 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 LSG1Q9H089 658 aaKnown RBP19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 IRAK4Q9NWZ3 460 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 SLC8A2Q9UPR5 921 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 STMN1P16949 149 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 IL1RL1Q01638 556 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 PROSER3Q2NL68 480 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 ARHGEF18Q6ZSZ5 1173 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 COA7Q96BR5 231 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 CAPS2Q9BXY5 557 aa19.7■□□□□ 0.74
SFSWAP-203ENST00000535236 LRRN2O75325 713 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 ADD2P35612 726 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 OR6B2Q6IFH4 312 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 LRRC8AQ8IWT6 810 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 ELMSAN1Q6PJG2 1045 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 TLR7Q9NYK1 1049 aaKnown RBP19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 FAM135BQ49AJ0 1406 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 ELF1P32519 619 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 OSTNP61366 133 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 IL9RQ01113 521 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 APBA1Q02410 837 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 FAM160B2Q86V87 743 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 SMAP1Q8IYB5 467 aaPredicted RBP19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 MRPL47Q9HD33 250 aaKnown RBP19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 PCDHA5Q9Y5H7 936 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 ATXN8OSP0DMR3 200 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 SERPINB6P35237 376 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 MAN2A1Q16706 1144 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 PPP1R16BQ96T49 567 aa19.69■□□□□ 0.74
SFSWAP-203ENST00000535236 ETF1P62495 437 aaKnown RBP19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 PDE1CQ14123 709 aaPredicted RBP19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 MIGA2Q7L4E1 593 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 RNF139Q8WU17 664 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 CARMIL3Q8ND23 1372 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 SGO2Q562F6 1265 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 CIAPIN1Q6FI81 312 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 SPZ1Q9BXG8 430 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 MAGED2Q9UNF1 606 aaPredicted RBP19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 WDR64B1ANS9 1081 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 DARS2Q6PI48 645 aaKnown RBP19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 SLC10A4Q96EP9 437 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 SMIM24O75264 130 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 DYNLT1P63172 113 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 SNX1Q13596 522 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 ARMCX2Q7L311 632 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 LCORLQ8N3X6 602 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 KCTD6Q8NC69 237 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 DNMT1P26358 1616 aaKnown RBP19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 OPHN1O60890 802 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 SURF1Q15526 300 aa19.68■□□□□ 0.74
SFSWAP-203ENST00000535236 USP17L3A6NCW0 530 aa19.67■□□□□ 0.74
SFSWAP-203ENST00000535236 USP17L4A6NCW7 530 aa19.67■□□□□ 0.74
SFSWAP-203ENST00000535236 EPHB1P54762 984 aa19.67■□□□□ 0.74
SFSWAP-203ENST00000535236 PDXDC2PQ6P474 469 aa19.67■□□□□ 0.74
SFSWAP-203ENST00000535236 USP17L1Q7RTZ2 530 aa19.67■□□□□ 0.74
SFSWAP-203ENST00000535236 FNDC3AQ9Y2H6 1198 aaKnown RBP19.67■□□□□ 0.74
SFSWAP-203ENST00000535236 MYCP01106 439 aaPredicted RBP19.67■□□□□ 0.74
SFSWAP-203ENST00000535236 KPNA2P52292 529 aaKnown RBP19.67■□□□□ 0.74
SFSWAP-203ENST00000535236 FKBP3Q00688 224 aaKnown RBP19.67■□□□□ 0.74
SFSWAP-203ENST00000535236 ZNF658Q5TYW1 1059 aaPredicted RBP19.67■□□□□ 0.74
SFSWAP-203ENST00000535236 SPDL1Q96EA4 605 aa19.67■□□□□ 0.74
SFSWAP-203ENST00000535236 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms