RNA–Protein interactions for RNA: ENST00000534143.5

CMTM1-220, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 781 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-220ENST00000534143 PCBP4P57723 403 aaKnown RBP7.13□□□□□ -1.27
CMTM1-220ENST00000534143 CCT2P78371 535 aaKnown RBP7.13□□□□□ -1.27
CMTM1-220ENST00000534143 ELOAQ14241 798 aaKnown RBP7.13□□□□□ -1.27
CMTM1-220ENST00000534143 SUZ12Q15022 739 aaKnown RBP7.13□□□□□ -1.27
CMTM1-220ENST00000534143 PPP2R5BQ15173 497 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 NTRK3Q16288 839 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 RTN1Q16799 776 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 NOL9Q5SY16 702 aaKnown RBP7.13□□□□□ -1.27
CMTM1-220ENST00000534143 SYNE3Q6ZMZ3 975 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 CATIPQ7Z7H3 387 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 LDHDQ86WU2 507 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 RAB11FIP4Q86YS3 637 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 CLEC10AQ8IUN9 316 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 KCTD17Q8N5Z5 321 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 FANCBQ8NB91 859 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 SMARCC2Q8TAQ2 1214 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 CHMP4CQ96CF2 233 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 CDCA5Q96FF9 252 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 LLPHQ9BRT6 129 aaKnown RBP7.13□□□□□ -1.27
CMTM1-220ENST00000534143 MYL10Q9BUA6 226 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 KAT14Q9H8E8 782 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 NCOA5Q9HCD5 579 aaKnown RBP7.13□□□□□ -1.27
CMTM1-220ENST00000534143 CLIP2Q9UDT6 1046 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 MKL2Q9ULH7 1088 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 ZBTB21Q9ULJ3 1066 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 STX8Q9UNK0 236 aa7.13□□□□□ -1.27
CMTM1-220ENST00000534143 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.13□□□□□ -1.27
CMTM1-220ENST00000534143 A0A1W2PRG0 241 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 GOLGA8AA7E2F4 631 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 ASNSP08243 561 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 SNHG28P0DPA3 235 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 FDPSP14324 419 aaKnown RBP7.12□□□□□ -1.27
CMTM1-220ENST00000534143 AMPD1P23109 780 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 METAP2P50579 478 aaKnown RBP eCLIP7.12□□□□□ -1.27
CMTM1-220ENST00000534143 ICA1Q05084 483 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 TYRO3Q06418 890 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 GRM4Q14833 912 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 GRIN2CQ14957 1233 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 MAP3K11Q16584 847 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 L1TD1Q5T7N2 865 aaKnown RBP7.12□□□□□ -1.27
CMTM1-220ENST00000534143 MAP1SQ66K74 1059 aaPredicted RBP7.12□□□□□ -1.27
CMTM1-220ENST00000534143 SYT9Q86SS6 491 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 MICU3Q86XE3 530 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 NSUN7Q8NE18 718 aaKnown RBP7.12□□□□□ -1.27
CMTM1-220ENST00000534143 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.12□□□□□ -1.27
CMTM1-220ENST00000534143 SLC30A3Q99726 388 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 CWC22Q9HCG8 908 aaKnown RBP7.12□□□□□ -1.27
CMTM1-220ENST00000534143 NAP1L2Q9ULW6 460 aaPredicted RBP7.12□□□□□ -1.27
CMTM1-220ENST00000534143 SYNPO2Q9UMS6 1093 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 FZD1Q9UP38 647 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 TMX2Q9Y320 296 aa7.12□□□□□ -1.27
CMTM1-220ENST00000534143 OTOFQ9HC10 1997 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 MYH6P13533 1939 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 TRPM7Q96QT4 1865 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 CCDC196A0A1B0GTZ2 297 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 F5H6K3 240 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 DHX16O60231 1041 aaKnown RBP7.11□□□□□ -1.27
CMTM1-220ENST00000534143 JAK2O60674 1132 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 DTNBO60941 627 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 HSP90AA1P07900 732 aaKnown RBP7.11□□□□□ -1.27
CMTM1-220ENST00000534143 PDHBP11177 359 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 IFNAR1P17181 557 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 NF2P35240 595 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 FMR1Q06787 632 aaKnown RBP eCLIP7.11□□□□□ -1.27
CMTM1-220ENST00000534143 KLRC3Q07444 240 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 RAB3GAP1Q15042 981 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 SLC35G1Q2M3R5 365 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 IER5Q5VY09 327 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 LINC00114Q6XXX2 140 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.11□□□□□ -1.27
CMTM1-220ENST00000534143 BTLAQ7Z6A9 289 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 NBPF11Q86T75 865 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 CCDC144CPQ8IYA2 1237 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 SCYL3Q8IZE3 742 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 LRRC47Q8N1G4 583 aaKnown RBP7.11□□□□□ -1.27
CMTM1-220ENST00000534143 JMYQ8N9B5 988 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 GMCL1P1Q8NEA9 526 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 ACER1Q8TDN7 264 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 NUP133Q8WUM0 1156 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 ZKSCAN4Q969J2 545 aaPredicted RBP7.11□□□□□ -1.27
CMTM1-220ENST00000534143 WRNIP1Q96S55 665 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 WDR18Q9BV38 432 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 RBM28Q9NW13 759 aaKnown RBP7.11□□□□□ -1.27
CMTM1-220ENST00000534143 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.11□□□□□ -1.27
CMTM1-220ENST00000534143 MAD2L2Q9UI95 211 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 KCNH4Q9UQ05 1017 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 SMC3Q9UQE7 1217 aa7.11□□□□□ -1.27
CMTM1-220ENST00000534143 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.1□□□□□ -1.27
CMTM1-220ENST00000534143 PTPDC1A2A3K4 754 aa7.1□□□□□ -1.27
CMTM1-220ENST00000534143 TRAF5O00463 557 aa7.1□□□□□ -1.27
CMTM1-220ENST00000534143 SIN3BO75182 1162 aa7.1□□□□□ -1.27
CMTM1-220ENST00000534143 ATG7O95352 703 aa7.1□□□□□ -1.27
CMTM1-220ENST00000534143 PLEKHA8P1O95397 391 aa7.1□□□□□ -1.27
CMTM1-220ENST00000534143 PTPRAP18433 802 aa7.1□□□□□ -1.27
CMTM1-220ENST00000534143 SMARCA1P28370 1054 aa7.1□□□□□ -1.27
CMTM1-220ENST00000534143 GJB2P29033 226 aa7.1□□□□□ -1.27
CMTM1-220ENST00000534143 KIF5BP33176 963 aa7.1□□□□□ -1.27
CMTM1-220ENST00000534143 ECE1P42892 770 aa7.1□□□□□ -1.27
CMTM1-220ENST00000534143 GNAQP50148 359 aa7.1□□□□□ -1.27
CMTM1-220ENST00000534143 HMGN5P82970 282 aaKnown RBP7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms