RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 MROH7Q68CQ1 1323 aa17.21■□□□□ 0.34
CPSF1-208ENST00000532560 KPNA6O60684 536 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 CTDNEP1O95476 244 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 SEMA3FQ13275 785 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 RABEP1Q15276 862 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 CELF3Q5SZQ8 465 aaKnown RBP17.2■□□□□ 0.34
CPSF1-208ENST00000532560 ANKRD33Q7Z3H0 272 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 NLRX1Q86UT6 975 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 NECAB1Q8N987 351 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 SLC43A3Q8NBI5 491 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 IL27Q8NEV9 243 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 PPTC7Q8NI37 304 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 AFG1LQ8WV93 481 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 CDHR1Q96JP9 859 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 TBC1D32Q96NH3 1257 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 TOX2Q96NM4 488 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 SEZ6LQ9BYH1 1024 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 TMEM260Q9NX78 707 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 UBIAD1Q9Y5Z9 338 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 SCN10AQ9Y5Y9 1956 aa17.2■□□□□ 0.34
CPSF1-208ENST00000532560 DNAH12Q6ZR08 3092 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 ARVCFO00192 962 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 GGPS1O95749 300 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 MYL3P08590 195 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 HOXD8P13378 290 aaPredicted RBP17.19■□□□□ 0.34
CPSF1-208ENST00000532560 ITGB5P18084 799 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 CDK7P50613 346 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 SP2Q02086 613 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 TLE2Q04725 743 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 NEDD9Q14511 834 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 MYSM1Q5VVJ2 828 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 JAKMIP3Q5VZ66 844 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 DHX37Q8IY37 1157 aaKnown RBP17.19■□□□□ 0.34
CPSF1-208ENST00000532560 VTI1AQ96AJ9 217 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 PGBD1Q96JS3 809 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 SENP7Q9BQF6 1050 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 MTG1Q9BT17 334 aaPredicted RBP17.19■□□□□ 0.34
CPSF1-208ENST00000532560 PCDH10Q9P2E7 1040 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 ZMYND8Q9ULU4 1186 aaPredicted RBP17.19■□□□□ 0.34
CPSF1-208ENST00000532560 LIMCH1Q9UPQ0 1083 aa17.19■□□□□ 0.34
CPSF1-208ENST00000532560 CEP290O15078 2479 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 PQBP1O60828 265 aaKnown RBP17.18■□□□□ 0.34
CPSF1-208ENST00000532560 NLRP5P59047 1200 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 DGKDQ16760 1214 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 GALNT17Q6IS24 598 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 METTL7BQ6UX53 244 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 DAGLBQ8NCG7 672 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 CRYGNQ8WXF5 182 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 SPATA33Q96N06 139 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 AIFM3Q96NN9 605 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 JADE2Q9NQC1 790 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 PDLIM7Q9NR12 457 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 GRIN2DO15399 1336 aa17.18■□□□□ 0.34
CPSF1-208ENST00000532560 ADAMTS3O15072 1205 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 MAFGO15525 162 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 CLTBP09497 229 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 ARHGAP4P98171 946 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 ST3GAL1Q11201 340 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 MTMR1Q13613 665 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 ITGA7Q13683 1181 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 NPY5RQ15761 445 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 CEP55Q53EZ4 464 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 NSUN7Q8NE18 718 aaKnown RBP17.17■□□□□ 0.34
CPSF1-208ENST00000532560 MXRA8Q9BRK3 442 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 ORC3Q9UBD5 711 aaPredicted RBP17.17■□□□□ 0.34
CPSF1-208ENST00000532560 PRKAG2Q9UGJ0 569 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 PCDHA4Q9UN74 947 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 MYH7BA7E2Y1 1941 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 LTBP2Q14767 1821 aa17.17■□□□□ 0.34
CPSF1-208ENST00000532560 DCDC2CA8MYV0 355 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 CYP3A4P08684 503 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 KCNA2P16389 499 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 SYN1P17600 705 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 XBP1P17861 261 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 PSMC6P62333 389 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 HSDL1Q3SXM5 330 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 FAM126BQ8IXS8 530 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 GIMAP8Q8ND71 665 aaPredicted RBP17.16■□□□□ 0.34
CPSF1-208ENST00000532560 RASGRP4Q8TDF6 673 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 WASF1Q92558 559 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 ZSCAN31Q96LW9 406 aaPredicted RBP17.16■□□□□ 0.34
CPSF1-208ENST00000532560 BACH2Q9BYV9 841 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 MLXIPQ9HAP2 919 aa17.16■□□□□ 0.34
CPSF1-208ENST00000532560 SH2B1Q9NRF2 756 aaPredicted RBP17.16■□□□□ 0.34
CPSF1-208ENST00000532560 M0R2N6 131 aa17.15■□□□□ 0.34
CPSF1-208ENST00000532560 ST18O60284 1047 aa17.15■□□□□ 0.34
CPSF1-208ENST00000532560 FDPSP14324 419 aaKnown RBP17.15■□□□□ 0.34
CPSF1-208ENST00000532560 FAAP100Q0VG06 881 aa17.15■□□□□ 0.34
CPSF1-208ENST00000532560 CYFIP1Q7L576 1253 aa17.15■□□□□ 0.34
CPSF1-208ENST00000532560 NIPA1Q7RTP0 329 aa17.15■□□□□ 0.34
CPSF1-208ENST00000532560 PHF20Q9BVI0 1012 aa17.15■□□□□ 0.34
CPSF1-208ENST00000532560 PRDM5Q9NQX1 630 aaPredicted RBP17.15■□□□□ 0.34
CPSF1-208ENST00000532560 DOCK5Q9H7D0 1870 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 MEIS1O00470 390 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 KIAA0355O15063 1070 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 TLR3O15455 904 aaKnown RBP17.14■□□□□ 0.33
CPSF1-208ENST00000532560 SORBS3O60504 671 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 PPFIA4O75335 1185 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 F2P00734 622 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 CD4P01730 458 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms