RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CBLCQ9ULV8 474 aa4.41□□□□□ -1.7
CD44-229ENST00000528672 YBX2Q9Y2T7 364 aaKnown RBP4.41□□□□□ -1.7
CD44-229ENST00000528672 TCRBV16S1A1N1A0A5B0 115 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 LRRC10BA6NIK2 292 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 WTIPA6NIX2 430 aaPredicted RBP4.4□□□□□ -1.71
CD44-229ENST00000528672 ZNF891A8MT65 544 aaPredicted RBP4.4□□□□□ -1.71
CD44-229ENST00000528672 GSG1L2A8MUP6 293 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 NKRFO15226 690 aaKnown RBP eCLIP4.4□□□□□ -1.71
CD44-229ENST00000528672 GLRX3O76003 335 aaKnown RBP4.4□□□□□ -1.71
CD44-229ENST00000528672 MAP4K4O95819 1239 aaPredicted RBP4.4□□□□□ -1.71
CD44-229ENST00000528672 LTFP02788 710 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 FUCA1P04066 466 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 CKMP06732 381 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 PAMP19021 973 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 RTP1P59025 263 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 GUCY1A3Q02108 690 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 STYK1Q6J9G0 422 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 PKN3Q6P5Z2 889 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 NLRX1Q86UT6 975 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 AHI1Q8N157 1196 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 CISD2Q8N5K1 135 aaKnown RBP4.4□□□□□ -1.71
CD44-229ENST00000528672 PCDH19Q8TAB3 1148 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 PLEKHO2Q8TD55 490 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 DIO2Q92813 273 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 CHAMP1Q96JM3 812 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 PSMD1Q99460 953 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 GEMIN8Q9NWZ8 242 aaKnown RBP4.4□□□□□ -1.71
CD44-229ENST00000528672 THRAP3Q9Y2W1 955 aaKnown RBP4.4□□□□□ -1.71
CD44-229ENST00000528672 NPFFR2Q9Y5X5 522 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 EID1Q9Y6B2 187 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 WASHC2CQ9Y4E1 1318 aa4.4□□□□□ -1.71
CD44-229ENST00000528672 TRBV23OR9-2A0A075B6M9 112 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 CCDC194A0A1B0GVG4 234 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 PEX10O60683 326 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 ALDH1L1O75891 902 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 TSPAN15O95858 294 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 JMJD7P0C870 316 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 PRKCAP17252 672 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 THBS2P35442 1172 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 LTBRP36941 435 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 GUCY2FP51841 1108 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 MESP2Q0VG99 397 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 SEC23AQ15436 765 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 PKN1Q16512 942 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 LCE5AQ5TCM9 118 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 EEF1DP3Q658K8 133 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 GALNT18Q6P9A2 607 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 MPZL3Q6UWV2 235 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 KSR1Q8IVT5 923 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 CCAR1Q8IX12 1150 aaKnown RBP4.39□□□□□ -1.71
CD44-229ENST00000528672 PPM1KQ8N3J5 372 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 AFAP1L2Q8N4X5 818 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 IGSF22Q8N9C0 903 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 SH3RF2Q8TEC5 729 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 LEO1Q8WVC0 666 aaPredicted RBP4.39□□□□□ -1.71
CD44-229ENST00000528672 DDX1Q92499 740 aaKnown RBP4.39□□□□□ -1.71
CD44-229ENST00000528672 SLC38A3Q99624 504 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 MTA3Q9BTC8 594 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 RNF32Q9H0A6 362 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.39□□□□□ -1.71
CD44-229ENST00000528672 RBPJLQ9UBG7 517 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 TELO2Q9Y4R8 837 aa4.39□□□□□ -1.71
CD44-229ENST00000528672 ABLIM1O14639 778 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 OPA1O60313 960 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 SEMA7AO75326 666 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 NTRK1P04629 796 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 PNLIPP16233 465 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 DNM2P50570 870 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 EPHB1P54762 984 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 TMEM62Q0P6H9 643 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 KRTAP19-4Q3LI73 84 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 TRIM61Q5EBN2 209 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 PIK3R6Q5UE93 754 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 HLA-DQA1Q5Y7H0 255 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 OLFML2BQ68BL8 750 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 LBX2Q6XYB7 198 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 CEP68Q76N32 757 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 MTDHQ86UE4 582 aaKnown RBP4.38□□□□□ -1.71
CD44-229ENST00000528672 OSTM1Q86WC4 334 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 FBXO15Q8NCQ5 510 aaPredicted RBP4.38□□□□□ -1.71
CD44-229ENST00000528672 NUP43Q8NFH3 380 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 DCAF4Q8WV16 495 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 PTPRN2Q92932 1015 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 INTS4Q96HW7 963 aaKnown RBP4.38□□□□□ -1.71
CD44-229ENST00000528672 CD244Q9BZW8 370 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 EPB41L4BQ9H329 900 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 CLDND1Q9NY35 253 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 GABBR1Q9UBS5 961 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 GPR160Q9UJ42 338 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 TAF6LQ9Y6J9 622 aa4.38□□□□□ -1.71
CD44-229ENST00000528672 PLEKHD1A6NEE1 506 aa4.37□□□□□ -1.71
CD44-229ENST00000528672 C22orf46C9J442 243 aa4.37□□□□□ -1.71
CD44-229ENST00000528672 TRAF5O00463 557 aa4.37□□□□□ -1.71
CD44-229ENST00000528672 TPD52L2O43399 206 aaKnown RBP4.37□□□□□ -1.71
CD44-229ENST00000528672 PRC1O43663 620 aa4.37□□□□□ -1.71
CD44-229ENST00000528672 EFCAB14O75071 495 aa4.37□□□□□ -1.71
CD44-229ENST00000528672 CPP00450 1065 aa4.37□□□□□ -1.71
CD44-229ENST00000528672 SOD2P04179 222 aa4.37□□□□□ -1.71
CD44-229ENST00000528672 AMY2AP04746 511 aa4.37□□□□□ -1.71
CD44-229ENST00000528672 MED14OSP0DP75 135 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms