RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 RNF113AO15541 343 aaKnown RBP4.92□□□□□ -1.62
CD44-226ENST00000527889 IDH1O75874 414 aaKnown RBP4.92□□□□□ -1.62
CD44-226ENST00000527889 PARNO95453 639 aaKnown RBP4.92□□□□□ -1.62
CD44-226ENST00000527889 NRLP54845 237 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 GPSM2P81274 684 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 CLCQ05315 142 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 SPEM2Q0P670 501 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 SEPT6Q14141 434 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 BECN1Q14457 450 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 ZMYM1Q5SVZ6 1142 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 FBXW10Q5XX13 1052 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 OLFM4Q6UX06 510 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 GK5Q6ZS86 529 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 KIAA1211Q6ZU35 1233 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 C16orf86Q6ZW13 317 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 REC114Q7Z4M0 266 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 TXNRD3Q86VQ6 643 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 LSRQ86X29 649 aaPredicted RBP4.92□□□□□ -1.62
CD44-226ENST00000527889 HSCBQ8IWL3 235 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 ASAP3Q8TDY4 903 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 STAG1Q8WVM7 1258 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 ACDQ96AP0 544 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 ZNF512BQ96KM6 892 aaPredicted RBP4.92□□□□□ -1.62
CD44-226ENST00000527889 SLC30A3Q99726 388 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 ANKRD2Q9GZV1 360 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 MTFR1LQ9H019 292 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 MUC3BQ9H195 1237 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 DDX56Q9NY93 547 aaKnown RBP4.92□□□□□ -1.62
CD44-226ENST00000527889 NAP1L2Q9ULW6 460 aaPredicted RBP4.92□□□□□ -1.62
CD44-226ENST00000527889 JAG2Q9Y219 1238 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 LEMD3Q9Y2U8 911 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 RBM8AQ9Y5S9 174 aaKnown RBP4.92□□□□□ -1.62
CD44-226ENST00000527889 ZNF804BA4D1E1 1349 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 MAST3O60307 1309 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 C10orf71Q711Q0 1435 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 KLRG2A4D1S0 409 aaPredicted RBP4.91□□□□□ -1.62
CD44-226ENST00000527889 ZBTB42B2RXF5 422 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 UFL1O94874 794 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 ARHGEF15O94989 841 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 CELA2BP08218 269 aaPredicted RBP4.91□□□□□ -1.62
CD44-226ENST00000527889 SRGNP10124 158 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 IMPDH2P12268 514 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 NPR1P16066 1061 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 PDE6AP16499 860 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 LMNB1P20700 586 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 CHRNA5P30532 468 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 HSPA4P34932 840 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 MASP1P48740 699 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 ZNF157P51786 506 aaPredicted RBP4.91□□□□□ -1.62
CD44-226ENST00000527889 ATP11AP98196 1134 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 PPP2R3AQ06190 1150 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 CHAF1AQ13111 956 aaPredicted RBP4.91□□□□□ -1.62
CD44-226ENST00000527889 RABEP1Q15276 862 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 FXNQ16595 210 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 TKFCQ3LXA3 575 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 MCMDC2Q4G0Z9 681 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 C2orf27AQ580R0 203 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 VPS53Q5VIR6 699 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 LARP1BQ659C4 914 aaKnown RBP4.91□□□□□ -1.62
CD44-226ENST00000527889 C1orf229Q6ZS94 237 aaPredicted RBP4.91□□□□□ -1.62
CD44-226ENST00000527889 C2CD5Q86YS7 1000 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 MAGEB6Q8N7X4 407 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 SPATA5Q8NB90 893 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 IPO4Q8TEX9 1081 aaKnown RBP4.91□□□□□ -1.62
CD44-226ENST00000527889 BHMTQ93088 406 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 OSBP2Q969R2 916 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 ZNF622Q969S3 477 aaKnown RBP eCLIP4.91□□□□□ -1.62
CD44-226ENST00000527889 GAL3ST3Q96A11 431 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 FAM84BQ96KN1 310 aaPredicted RBP4.91□□□□□ -1.62
CD44-226ENST00000527889 CRAMP1Q96RY5 1269 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 FEZ1Q99689 392 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 BRIP1Q9BX63 1249 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 PBX4Q9BYU1 374 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 IRF2BPLQ9H1B7 796 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 RASSF4Q9H2L5 321 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 HELLSQ9NRZ9 838 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 MARK1Q9P0L2 795 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 RAPGEFL1Q9UHV5 662 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 KLF15Q9UIH9 416 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 CYP8B1Q9UNU6 501 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 NSFL1CQ9UNZ2 370 aaKnown RBP4.91□□□□□ -1.62
CD44-226ENST00000527889 PHF24Q9UPV7 400 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 SAMM50Q9Y512 469 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 SNX14Q9Y5W7 946 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 TAF6LQ9Y6J9 622 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 GREB1LQ9C091 1923 aaPredicted RBP4.91□□□□□ -1.62
CD44-226ENST00000527889 XDHP47989 1333 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 ZNF532Q9HCE3 1301 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 IRS2Q9Y4H2 1338 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 COL6A3P12111 3177 aa4.91□□□□□ -1.62
CD44-226ENST00000527889 MYH7BA7E2Y1 1941 aa4.9□□□□□ -1.62
CD44-226ENST00000527889 A0A0G2JLW4 131 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 J3QW42 95 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 SLC27A2O14975 620 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 GPAA1O43292 621 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 FRAT2O75474 233 aaPredicted RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 GJB6O95452 261 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 ZFYP08048 801 aaPredicted RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 HSPA8P11142 646 aaKnown RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 BMP4P12644 408 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms