RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 ITIH2P19823 946 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 RRM1P23921 792 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 ST5P78524 1137 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 PAK1Q13153 545 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 NKG7Q16617 165 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 CLEC16AQ2KHT3 1053 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 PRAMEF13Q5VWM6 474 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 TTLL5Q6EMB2 1281 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 CFAP161Q6P656 301 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 IGF2-ASQ6U949 168 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 RASSF3Q86WH2 238 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 PTRH1Q86Y79 214 aaKnown RBP6.52□□□□□ -1.37
USP47-204ENST00000525078 EFHBQ8N7U6 833 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 CXorf38Q8TB03 319 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.52□□□□□ -1.37
USP47-204ENST00000525078 DIS3LQ8TF46 1054 aaKnown RBP6.52□□□□□ -1.37
USP47-204ENST00000525078 WNT8BQ93098 351 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 HPS3Q969F9 1004 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 GCC1Q96CN9 775 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 TMEM169Q96HH4 297 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 RIPOR3Q96MK2 946 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 ZFP42Q96MM3 310 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 LPIN3Q9BQK8 851 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 GTPBP4Q9BZE4 634 aaKnown RBP6.52□□□□□ -1.37
USP47-204ENST00000525078 WDR12Q9GZL7 423 aaKnown RBP6.52□□□□□ -1.37
USP47-204ENST00000525078 NRSN2Q9GZP1 204 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 TOPORSQ9NS56 1045 aaPredicted RBP6.52□□□□□ -1.37
USP47-204ENST00000525078 RRN3Q9NYV6 651 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 GDF2Q9UK05 429 aaPredicted RBP6.52□□□□□ -1.37
USP47-204ENST00000525078 NAGPAQ9UK23 515 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 NOL7Q9UMY1 257 aaKnown RBP6.52□□□□□ -1.37
USP47-204ENST00000525078 PHF24Q9UPV7 400 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 SF3B6Q9Y3B4 125 aaKnown RBP6.52□□□□□ -1.37
USP47-204ENST00000525078 FHOD1Q9Y613 1164 aa6.52□□□□□ -1.37
USP47-204ENST00000525078 RASA4BC9J798 803 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 FAM227AF5H4B4 570 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 GSTA4O15217 222 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 RASA4O43374 803 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 AOC2O75106 756 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 CKMP06732 381 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 ITGA6P23229 1130 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 GPR3P46089 330 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 TERF1P54274 439 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 ID3Q02535 119 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 TNFAIP2Q03169 654 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 SCRN1Q12765 414 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 SEMA5AQ13591 1074 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 TERF2Q15554 542 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 DBN1Q16643 649 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 PRR16Q569H4 304 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 ATAT1Q5SQI0 421 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 DENND5AQ6IQ26 1287 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 LILRA6Q6PI73 481 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 RSPO2Q6UXX9 243 aaPredicted RBP6.51□□□□□ -1.37
USP47-204ENST00000525078 FAM43BQ6ZT52 329 aaPredicted RBP6.51□□□□□ -1.37
USP47-204ENST00000525078 OVCH2Q7RTZ1 564 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 KCT2Q8NC54 265 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 NAXEQ8NCW5 288 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 PCDH19Q8TAB3 1148 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 PPP1R35Q8TAP8 253 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 SYTL5Q8TDW5 730 aaPredicted RBP6.51□□□□□ -1.37
USP47-204ENST00000525078 JADE3Q92613 823 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 ISCA1Q9BUE6 129 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 WDR18Q9BV38 432 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 DSCC1Q9BVC3 393 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 RSPH9Q9H1X1 276 aaPredicted RBP6.51□□□□□ -1.37
USP47-204ENST00000525078 SMOC1Q9H4F8 434 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 DISC1Q9NRI5 854 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 SMC4Q9NTJ3 1288 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 CCM2LQ9NUG4 571 aaPredicted RBP6.51□□□□□ -1.37
USP47-204ENST00000525078 FRRS1LQ9P0K9 344 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 DNMT3LQ9UJW3 386 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 POLHQ9Y253 713 aa6.51□□□□□ -1.37
USP47-204ENST00000525078 CCDC66A2RUB6 948 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 H7C1D1 291 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 MEFVO15553 781 aaPredicted RBP6.5□□□□□ -1.37
USP47-204ENST00000525078 SIN3BO75182 1162 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 LSP1P33241 339 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 MECP2P51608 486 aaKnown RBP6.5□□□□□ -1.37
USP47-204ENST00000525078 EIF5P55010 431 aaKnown RBP6.5□□□□□ -1.37
USP47-204ENST00000525078 PCBP4P57723 403 aaKnown RBP6.5□□□□□ -1.37
USP47-204ENST00000525078 NUCB1Q02818 461 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 ARHGAP44Q17R89 818 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 CCDC96Q2M329 555 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 PSAPL1Q6NUJ1 521 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 OTOP3Q7RTS5 596 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 OVCH1Q7RTY7 1134 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 CISD2Q8N5K1 135 aaKnown RBP6.5□□□□□ -1.37
USP47-204ENST00000525078 TGFBRAP1Q8WUH2 860 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 LMBR1Q8WVP7 490 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 PPM1MQ96MI6 270 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 CARD10Q9BWT7 1032 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 GPR27Q9NS67 375 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 DNAJC28Q9NX36 388 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 CDC23Q9UJX2 597 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 RNF112Q9ULX5 631 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 PCDHA11Q9Y5I1 949 aa6.5□□□□□ -1.37
USP47-204ENST00000525078 LRRFIP2Q9Y608 721 aaKnown RBP6.5□□□□□ -1.37
USP47-204ENST00000525078 GOLIM4O00461 696 aa6.49□□□□□ -1.37
USP47-204ENST00000525078 FSCN2O14926 492 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms