RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 COASYQ13057 564 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 EZH2Q15910 746 aaKnown RBP11.22□□□□□ -0.61
MCF2-209ENST00000520602 REXO1L1PQ8IX06 675 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 ZMYND15Q9H091 742 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 PLEKHA4Q9H4M7 779 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 AGPAT5Q9NUQ2 364 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 COL4A3BPQ9Y5P4 624 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 GAKO14976 1311 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 GPR161Q8N6U8 529 aaKnown RBP11.22□□□□□ -0.61
MCF2-209ENST00000520602 KBTBD4Q9NVX7 518 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 FRMD4BQ9Y2L6 1034 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 PVALEFA0A1B0GWK0 134 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 EXOC3O60645 756 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 ZBTB7AO95365 584 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 SMARCA1P28370 1054 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 KLK7P49862 253 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 ASIC2Q16515 512 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 PPP1R18Q6NYC8 613 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 BICD1Q96G01 975 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 ZDHHC15Q96MV8 337 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 C7orf25Q9BPX7 421 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 ZNF577Q9BSK1 485 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 NYAP2Q9P242 653 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 MKRN1Q9UHC7 482 aaKnown RBP11.22□□□□□ -0.61
MCF2-209ENST00000520602 STRCQ7RTU9 1775 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 ESYT2A0FGR8 921 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 TESPA1A2RU30 521 aaPredicted RBP11.21□□□□□ -0.61
MCF2-209ENST00000520602 CCDC169A6NNP5 214 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 EIF4A3P38919 411 aaKnown RBP11.21□□□□□ -0.61
MCF2-209ENST00000520602 CLCN6P51797 869 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 PDIA5Q14554 519 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 SHROOM1Q2M3G4 852 aaPredicted RBP11.21□□□□□ -0.61
MCF2-209ENST00000520602 CDKAL1Q5VV42 579 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 FAM178BQ8IXR5 827 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 RTKN2Q8IZC4 609 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 ZNF341Q9BYN7 854 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 TSGA10Q9BZW7 698 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 KCNJ6P48051 423 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 RASSF7Q02833 373 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 GRB10Q13322 594 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 HLTFQ14527 1009 aaKnown RBP eCLIP11.21□□□□□ -0.61
MCF2-209ENST00000520602 MCTP2Q6DN12 878 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 MIER3Q7Z3K6 550 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 SRGAP1Q7Z6B7 1085 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 NUDT12Q9BQG2 462 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 PICK1Q9NRD5 415 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 RGL1Q9NZL6 768 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 TFR2Q9UP52 801 aa11.21□□□□□ -0.61
MCF2-209ENST00000520602 BACH1O14867 736 aa11.21□□□□□ -0.62
MCF2-209ENST00000520602 ECE1P42892 770 aa11.21□□□□□ -0.62
MCF2-209ENST00000520602 LRRC63Q05C16 580 aa11.21□□□□□ -0.62
MCF2-209ENST00000520602 AP3B2Q13367 1082 aa11.21□□□□□ -0.62
MCF2-209ENST00000520602 RETREG2Q8NC44 543 aa11.21□□□□□ -0.62
MCF2-209ENST00000520602 ITGB4P16144 1822 aa11.21□□□□□ -0.62
MCF2-209ENST00000520602 CTIFO43310 598 aaKnown RBP11.2□□□□□ -0.62
MCF2-209ENST00000520602 PSMD2Q13200 908 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 ODR4Q5SWX8 454 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 KRT26Q7Z3Y9 468 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 GUF1Q8N442 669 aaKnown RBP11.2□□□□□ -0.62
MCF2-209ENST00000520602 TBC1D5Q92609 795 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 MTRQ99707 1265 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 HSD3B7Q9H2F3 369 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 TRIM10Q9UDY6 481 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 MYH2Q9UKX2 1941 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 NUP188Q5SRE5 1749 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 GNA14O95837 355 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 MCM3P25205 808 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 TAF3Q5VWG9 929 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 SFR1Q86XK3 245 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 ACER1Q8TDN7 264 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 TOGARAM1Q9Y4F4 1720 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 PSMD14O00487 310 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 LMAN1P49257 510 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 USP11P51784 963 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 ORC2Q13416 577 aaPredicted RBP11.2□□□□□ -0.62
MCF2-209ENST00000520602 NAALADL2Q58DX5 795 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 NOX5Q96PH1 765 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 PARD6BQ9BYG5 372 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 TMEM39BQ9GZU3 492 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 SERPINA10Q9UK55 444 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 PRR12Q9ULL5 1215 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 TJP1Q07157 1748 aa11.2□□□□□ -0.62
MCF2-209ENST00000520602 SRGAP2O75044 1071 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 ZBED4O75132 1171 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 SLC15A2Q16348 729 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 ARHGAP44Q17R89 818 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 SLC30A10Q6XR72 485 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 TEKT3Q9BXF9 490 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 CRYBG1Q9Y4K1 1723 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 ZMYND10O75800 440 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 CXCR5P32302 372 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 TNFAIP1Q13829 316 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 TUBB2AQ13885 445 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 CIAPIN1Q6FI81 312 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 LEKR1Q6ZMV7 388 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 RABGGTAQ92696 567 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 TUBB2BQ9BVA1 445 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 FXR2P51116 673 aaKnown RBP eCLIP11.19□□□□□ -0.62
MCF2-209ENST00000520602 WHAMMP3Q1A5X7 153 aa11.19□□□□□ -0.62
MCF2-209ENST00000520602 STYK1Q6J9G0 422 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms