RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 CALR3Q96L12 384 aaKnown RBP3.32□□□□□ -1.88
MCF2-208ENST00000519895 WRNIP1Q96S55 665 aa3.32□□□□□ -1.88
MCF2-208ENST00000519895 SPZ1Q9BXG8 430 aa3.32□□□□□ -1.88
MCF2-208ENST00000519895 TMEM39BQ9GZU3 492 aa3.32□□□□□ -1.88
MCF2-208ENST00000519895 RANBP17Q9H2T7 1088 aaKnown RBP3.32□□□□□ -1.88
MCF2-208ENST00000519895 POLR3EQ9NVU0 708 aa3.32□□□□□ -1.88
MCF2-208ENST00000519895 AATFQ9NY61 560 aaKnown RBP eCLIP3.32□□□□□ -1.88
MCF2-208ENST00000519895 ABCB11O95342 1321 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 SNAP23O00161 211 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 NKRFO15226 690 aaKnown RBP eCLIP3.31□□□□□ -1.88
MCF2-208ENST00000519895 TBC1D4O60343 1298 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 RFX1P22670 979 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 VAMP1P23763 118 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 GRM4Q14833 912 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 ANGPT1Q15389 498 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 TMEM259Q4ZIN3 620 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 VARS2Q5ST30 1063 aaKnown RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 TMEM240Q5SV17 173 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 MB21D2Q8IYB1 491 aaPredicted RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 NCOA7Q8NI08 942 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 GLMNQ92990 594 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 PABPC5Q96DU9 382 aaKnown RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.31□□□□□ -1.88
MCF2-208ENST00000519895 PALD1Q9ULE6 856 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 PPP1R9AQ9ULJ8 1098 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 PPME1Q9Y570 386 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 LOC100996750A0A140TA64 210 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 TCP10L2B9ZVM9 353 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 BHMG1C9JSJ3 638 aaPredicted RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 PIK3CDO00329 1044 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 ZNF213O14771 459 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 FGAP02671 866 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 HOXD8P13378 290 aaPredicted RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 TGM1P22735 817 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 CST5P28325 142 aaPredicted RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 EPHB4P54760 987 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 DYNLL1P63167 89 aaKnown RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 SMAD4Q13485 552 aaKnown RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 COG2Q14746 738 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 SART3Q15020 963 aaKnown RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 KCNV1Q6PIU1 500 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 SLC39A5Q6ZMH5 540 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 MFSD6Q6ZSS7 791 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 KIAA1211Q6ZU35 1233 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 NIPA1Q7RTP0 329 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 SIAH1Q8IUQ4 282 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 ZNF444Q8N0Y2 327 aaPredicted RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 DNERQ8NFT8 737 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 ZNF274Q96GC6 653 aaPredicted RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 MPHOSPH6Q99547 160 aaKnown RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 NAP1L4Q99733 375 aaKnown RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 TSEN34Q9BSV6 310 aaKnown RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 MXD3Q9BW11 206 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 KRTAP4-6Q9BYQ5 205 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 C22orf23Q9BZE7 217 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 RIOX1Q9H6W3 641 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 ARMT1Q9H993 441 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 VEZTQ9HBM0 779 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 MCM9Q9NXL9 1143 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 YBX2Q9Y2T7 364 aaKnown RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 SIP14410 1827 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 DNAJC25-GNG10A0A024R161 153 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 CCL15-CCL14A0A0B4J2E2 113 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 A0A0D9SFI3 127 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 CCDC196A0A1B0GTZ2 297 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 TRIM43BA6NCK2 446 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 BTBD19C9JJ37 291 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 USP17L12C9JPN9 530 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 USP17L21D6R901 530 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 SMARCA5O60264 1052 aaPredicted RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 KPNA6O60684 536 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 CNMDO75829 334 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 KIF5BP33176 963 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 PTPN11Q06124 597 aaPredicted RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 GRB14Q14449 540 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 CCL15Q16663 113 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 COL28A1Q2UY09 1125 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 MOXD1Q6UVY6 613 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 IQCA1Q86XH1 822 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 PRPF38AQ8NAV1 312 aaKnown RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 DAGLBQ8NCG7 672 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 RSPH1Q8WYR4 309 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 TRIM43Q96BQ3 446 aaPredicted RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 CCDC136Q96JN2 1154 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 IWS1Q96ST2 819 aa3.31□□□□□ -1.88
MCF2-208ENST00000519895 UPF3AQ9H1J1 476 aaKnown RBP3.31□□□□□ -1.88
MCF2-208ENST00000519895 TENM4Q6N022 2769 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 CNTNAP5Q8WYK1 1306 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 PALM3A6NDB9 673 aaPredicted RBP3.3□□□□□ -1.88
MCF2-208ENST00000519895 TM4SF5O14894 197 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 SIX3O95343 332 aaPredicted RBP3.3□□□□□ -1.88
MCF2-208ENST00000519895 TOP3BO95985 862 aaKnown RBP3.3□□□□□ -1.88
MCF2-208ENST00000519895 MCM5P33992 734 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 FLT3LGP49771 235 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 PTPN21Q16825 1174 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 TBC1D9Q6ZT07 1266 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 MCF2L2Q86YR7 1114 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 KCNN1Q92952 543 aa3.3□□□□□ -1.88
MCF2-208ENST00000519895 EMID1Q96A84 441 aaPredicted RBP3.3□□□□□ -1.88
MCF2-208ENST00000519895 TOX2Q96NM4 488 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms