RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 MRPL11Q9Y3B7 192 aaKnown RBP12.8□□□□□ -0.36
SYNPO-204ENST00000519664 POTEB3A0JP26 581 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 POTECB2RU33 542 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 KLRK1P26718 216 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 POTEBQ6S5H4 581 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 B4GALNT4Q76KP1 1039 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 TEX2Q8IWB9 1127 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 RETREG2Q8NC44 543 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 BPIFA3Q9BQP9 254 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 THAP9Q9H5L6 903 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 METTL14Q9HCE5 456 aaKnown RBP12.8□□□□□ -0.36
SYNPO-204ENST00000519664 TMOD4Q9NZQ9 345 aa12.8□□□□□ -0.36
SYNPO-204ENST00000519664 LGALS16A8MUM7 142 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 ITPK1Q13572 414 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 NFIXQ14938 502 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 MPHOSPH6Q99547 160 aaKnown RBP12.79□□□□□ -0.36
SYNPO-204ENST00000519664 ANO3Q9BYT9 981 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 ATP8B1O43520 1251 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 POLD1P28340 1107 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 IFNAR2P48551 515 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 TTBK2Q6IQ55 1244 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 FMNL3Q8IVF7 1028 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 MAGEF1Q9HAY2 307 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 RIC8AQ9NPQ8 531 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 GCNT4Q9P109 453 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 PI4KBQ9UBF8 816 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 TFR2Q9UP52 801 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 MORC2Q9Y6X9 1032 aaPredicted RBP12.79□□□□□ -0.36
SYNPO-204ENST00000519664 MROH2AA6NES4 1674 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 PNMA6FA0A0J9YX94 578 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 ESYT3A0FGR9 886 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 FOSP01100 380 aaPredicted RBP12.79□□□□□ -0.36
SYNPO-204ENST00000519664 STAT3P40763 770 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 ATP2C1P98194 919 aaPredicted RBP12.79□□□□□ -0.36
SYNPO-204ENST00000519664 TEKT3Q9BXF9 490 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 DENND2CQ68D51 928 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 MARCH10Q8NA82 808 aaPredicted RBP12.79□□□□□ -0.36
SYNPO-204ENST00000519664 FAM71BQ8TC56 605 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 POMGNT1Q8WZA1 660 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 IQCDQ96DY2 449 aa12.79□□□□□ -0.36
SYNPO-204ENST00000519664 GOLGA8IPA6NC78 632 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 LRRIQ4A6NIV6 560 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 LRRC53A6NM62 1247 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 GOLGA8JA6NMD2 632 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 NCK2O43639 380 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 AFPP02771 609 aaKnown RBP12.78□□□□□ -0.36
SYNPO-204ENST00000519664 CC2D1AQ6P1N0 951 aaPredicted RBP12.78□□□□□ -0.36
SYNPO-204ENST00000519664 PPP1R21Q6ZMI0 780 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 ZNF354CQ86Y25 554 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 PLA2G12BQ9BX93 195 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 CPSF2Q9P2I0 782 aaKnown RBP12.78□□□□□ -0.36
SYNPO-204ENST00000519664 TRIM10Q9UDY6 481 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 PNPLA7Q6ZV29 1317 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 MYO1CO00159 1063 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 HNRNPDLO14979 420 aaKnown RBP12.78□□□□□ -0.36
SYNPO-204ENST00000519664 RGS16O15492 202 aaPredicted RBP12.78□□□□□ -0.36
SYNPO-204ENST00000519664 AKR1B1P15121 316 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 KRT15P19012 456 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 GFPT1Q06210 699 aaPredicted RBP12.78□□□□□ -0.36
SYNPO-204ENST00000519664 LIN9Q5TKA1 542 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 CC2D2BQ6DHV5 1058 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 SH2D3AQ9BRG2 576 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 MAK16Q9BXY0 300 aaKnown RBP12.78□□□□□ -0.36
SYNPO-204ENST00000519664 ANKFY1Q9P2R3 1169 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 ADAM21Q9UKJ8 722 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 PACSIN2Q9UNF0 486 aaPredicted RBP12.78□□□□□ -0.36
SYNPO-204ENST00000519664 POTEFA5A3E0 1075 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 POTEIP0CG38 1075 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 ATF7P17544 494 aaPredicted RBP12.78□□□□□ -0.36
SYNPO-204ENST00000519664 ALKBH5Q6P6C2 394 aaKnown RBP12.78□□□□□ -0.36
SYNPO-204ENST00000519664 POTEGQ6S5H5 508 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 POTEEQ6S8J3 1075 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 MAGOHBQ96A72 148 aaKnown RBP12.78□□□□□ -0.36
SYNPO-204ENST00000519664 MED4Q9NPJ6 270 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 BARHL2Q9NY43 387 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 ATP8A1Q9Y2Q0 1164 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 KIAA1210Q9ULL0 1709 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 CAMTA2O94983 1202 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 TBC1D8O95759 1140 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 PLTPP55058 493 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 C12orf60Q5U649 245 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 KAZNQ674X7 775 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 METTL13Q8N6R0 699 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 VTI1AQ96AJ9 217 aa12.78□□□□□ -0.36
SYNPO-204ENST00000519664 EIF2AK2P19525 551 aaKnown RBP12.77□□□□□ -0.36
SYNPO-204ENST00000519664 RPAINQ86UA6 219 aa12.77□□□□□ -0.36
SYNPO-204ENST00000519664 DEPTORQ8TB45 409 aa12.77□□□□□ -0.36
SYNPO-204ENST00000519664 FUCA2Q9BTY2 467 aa12.77□□□□□ -0.36
SYNPO-204ENST00000519664 TMEM60Q9H2L4 133 aa12.77□□□□□ -0.36
SYNPO-204ENST00000519664 TMEM51Q9NW97 253 aa12.77□□□□□ -0.36
SYNPO-204ENST00000519664 SWAP70Q9UH65 585 aa12.77□□□□□ -0.36
SYNPO-204ENST00000519664 NFU1Q9UMS0 254 aa12.77□□□□□ -0.36
SYNPO-204ENST00000519664 GCFC2P16383 781 aaKnown RBP12.77□□□□□ -0.37
SYNPO-204ENST00000519664 LIG4P49917 911 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 GPSM2P81274 684 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 PPP2R5DQ14738 602 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 NAA25Q14CX7 972 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 ANKRD40Q6AI12 368 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 CCDC170Q8IYT3 715 aa12.77□□□□□ -0.37
SYNPO-204ENST00000519664 KCNB2Q92953 911 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms