RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 SPATA32Q96LK8 384 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 NIFKQ9BYG3 293 aaKnown RBP4.44□□□□□ -1.7
CPNE3-204ENST00000517862 PHACTR1Q9C0D0 580 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 TACC3Q9Y6A5 838 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 DOPEY2Q9Y3R5 2298 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 TLN1Q9Y490 2541 aaKnown RBP4.44□□□□□ -1.7
CPNE3-204ENST00000517862 SCN9AQ15858 1988 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 CDK2AP1O14519 115 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 ECE2O60344 883 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 USP2O75604 605 aaPredicted RBP4.43□□□□□ -1.7
CPNE3-204ENST00000517862 VIL1P09327 827 aaKnown RBP4.43□□□□□ -1.7
CPNE3-204ENST00000517862 HMGB1P09429 215 aaKnown RBP4.43□□□□□ -1.7
CPNE3-204ENST00000517862 SLC5A1P13866 664 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 POU3F2P20265 443 aaPredicted RBP4.43□□□□□ -1.7
CPNE3-204ENST00000517862 MZF1P28698 734 aaPredicted RBP4.43□□□□□ -1.7
CPNE3-204ENST00000517862 GNA15P30679 374 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 DNAJA1P31689 397 aaKnown RBP4.43□□□□□ -1.7
CPNE3-204ENST00000517862 NOS2P35228 1153 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 GTF2F1P35269 517 aaKnown RBP eCLIP4.43□□□□□ -1.7
CPNE3-204ENST00000517862 ADH7P40394 386 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 GRB10Q13322 594 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 ARSJQ5FYB0 599 aaPredicted RBP4.43□□□□□ -1.7
CPNE3-204ENST00000517862 TMEM240Q5SV17 173 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 GIMAP6Q6P9H5 292 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 C20orf204Q6ZNR8 217 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 ARNTL2Q8WYA1 636 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 L3MBTL2Q969R5 705 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 COA7Q96BR5 231 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 IFT43Q96FT9 208 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 RBM17Q96I25 401 aaKnown RBP4.43□□□□□ -1.7
CPNE3-204ENST00000517862 CRAMP1Q96RY5 1269 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 TGIF2Q9GZN2 237 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 GGNBP2Q9H3C7 697 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 BSDC1Q9NW68 430 aaPredicted RBP4.43□□□□□ -1.7
CPNE3-204ENST00000517862 STOML1Q9UBI4 398 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 HCN2Q9UL51 889 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 USP20Q9Y2K6 914 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 HRH3Q9Y5N1 445 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 R4GN57 208 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 SHROOM3Q8TF72 1996 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 WDFY3Q8IZQ1 3526 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 ZNF521Q96K83 1311 aa4.43□□□□□ -1.7
CPNE3-204ENST00000517862 TICRRQ7Z2Z1 1910 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 PDHXO00330 501 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 EIF1AYO14602 144 aaKnown RBP4.42□□□□□ -1.7
CPNE3-204ENST00000517862 C1QL1O75973 258 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 TXLNAP40222 546 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 RTN1Q16799 776 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 COL28A1Q2UY09 1125 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 C11orf91Q3C1V1 193 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 ALG1LQ6GMV1 187 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 TREML1Q86YW5 311 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 ZNF295-AS1Q8N0V1 137 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 AGBL3Q8NEM8 1001 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 NEK9Q8TD19 979 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 RIPOR3Q96MK2 946 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 LNPKQ9C0E8 428 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 WDR26Q9H7D7 661 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 METTL5Q9NRN9 209 aaKnown RBP4.42□□□□□ -1.7
CPNE3-204ENST00000517862 LMCD1Q9NZU5 365 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 FOXD3Q9UJU5 478 aaPredicted RBP4.42□□□□□ -1.7
CPNE3-204ENST00000517862 PTPRQQ9UMZ3 2332 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.42□□□□□ -1.7
CPNE3-204ENST00000517862 PCDHA11Q9Y5I1 949 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 LRRK2Q5S007 2527 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 TNKSO95271 1327 aa4.42□□□□□ -1.7
CPNE3-204ENST00000517862 MYBBP1AQ9BQG0 1328 aaKnown RBP4.42□□□□□ -1.7
CPNE3-204ENST00000517862 A0A1W2PP64 1363 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 RTL1A6NKG5 1358 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 WNT10BO00744 389 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 KIAA0355O15063 1070 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 MAFO75444 373 aaPredicted RBP4.41□□□□□ -1.7
CPNE3-204ENST00000517862 CLTBP09497 229 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 FAM157BP0CG42 384 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 RACK1P63244 317 aaKnown RBP4.41□□□□□ -1.7
CPNE3-204ENST00000517862 FGD1P98174 961 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 TLE2Q04725 743 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 SNAPC2Q13487 334 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 ANGPT1Q15389 498 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 TEAD4Q15561 434 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 SUPT20HL1Q3ZLR7 823 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.41□□□□□ -1.7
CPNE3-204ENST00000517862 MAP3K21Q5TCX8 1036 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 EP400NLQ6ZTU2 488 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 ZNF365Q70YC5 407 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 C16orf59Q7L2K0 433 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 CRELD1Q96HD1 420 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 DEFB129Q9H1M3 183 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 NCDNQ9UBB6 729 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 PAXBP1Q9Y5B6 917 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 CELSR3Q9NYQ7 3312 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 AKAP13Q12802 2813 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 ZFHX3Q15911 3703 aa4.41□□□□□ -1.7
CPNE3-204ENST00000517862 HEG1Q9ULI3 1381 aa4.4□□□□□ -1.7
CPNE3-204ENST00000517862 DUOX1Q9NRD9 1551 aa4.4□□□□□ -1.7
CPNE3-204ENST00000517862 DNM1LO00429 736 aa4.4□□□□□ -1.71
CPNE3-204ENST00000517862 SLC30A4O14863 429 aa4.4□□□□□ -1.71
CPNE3-204ENST00000517862 PPM1GO15355 546 aaPredicted RBP4.4□□□□□ -1.71
CPNE3-204ENST00000517862 SASH1O94885 1247 aa4.4□□□□□ -1.71
CPNE3-204ENST00000517862 CA3P07451 260 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms