RNA–Protein interactions for RNA: ENST00000517525.1

PVT1-204, Transcript of Pvt1 oncogene, humanhuman

TSL 3

Gene PVT1, Length 392 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-204ENST00000517525 TRPV6Q9H1D0 765 aa28.29■■■□□ 2.12
PVT1-204ENST00000517525 STXBP3O00186 592 aa28.28■■■□□ 2.12
PVT1-204ENST00000517525 PDIA3P30101 505 aaKnown RBP28.28■■■□□ 2.12
PVT1-204ENST00000517525 ANAPC15P60006 121 aa28.28■■■□□ 2.12
PVT1-204ENST00000517525 SHHQ15465 462 aa28.28■■■□□ 2.12
PVT1-204ENST00000517525 PFKFB3Q16875 520 aaPredicted RBP28.28■■■□□ 2.12
PVT1-204ENST00000517525 IL17RAQ96F46 866 aa28.28■■■□□ 2.12
PVT1-204ENST00000517525 NOC4LQ9BVI4 516 aaKnown RBP28.28■■■□□ 2.12
PVT1-204ENST00000517525 SPDYE3A6NKU9 549 aa28.27■■■□□ 2.12
PVT1-204ENST00000517525 PRPF3O43395 683 aaKnown RBP28.27■■■□□ 2.12
PVT1-204ENST00000517525 GGPS1O95749 300 aa28.27■■■□□ 2.12
PVT1-204ENST00000517525 FOSP01100 380 aaPredicted RBP28.27■■■□□ 2.12
PVT1-204ENST00000517525 EPHB4P54760 987 aa28.27■■■□□ 2.12
PVT1-204ENST00000517525 NAPAP54920 295 aa28.27■■■□□ 2.12
PVT1-204ENST00000517525 SEMA3FQ13275 785 aa28.27■■■□□ 2.12
PVT1-204ENST00000517525 PPIGQ13427 754 aaKnown RBP eCLIP28.27■■■□□ 2.123e-7■■□□□ 14.2
PVT1-204ENST00000517525 TOB2Q14106 344 aaPredicted RBP28.27■■■□□ 2.12
PVT1-204ENST00000517525 NEDD9Q14511 834 aa28.27■■■□□ 2.12
PVT1-204ENST00000517525 NTRK3Q16288 839 aa28.27■■■□□ 2.12
PVT1-204ENST00000517525 TMEM199Q8N511 208 aa28.27■■■□□ 2.12
PVT1-204ENST00000517525 NAP1L2Q9ULW6 460 aaPredicted RBP28.27■■■□□ 2.12
PVT1-204ENST00000517525 HAS3O00219 553 aa28.26■■■□□ 2.11
PVT1-204ENST00000517525 F2P00734 622 aa28.26■■■□□ 2.11
PVT1-204ENST00000517525 C9orf50Q5SZB4 431 aa28.26■■■□□ 2.11
PVT1-204ENST00000517525 NLRX1Q86UT6 975 aa28.26■■■□□ 2.11
PVT1-204ENST00000517525 GPRASP2Q96D09 838 aa28.26■■■□□ 2.11
PVT1-204ENST00000517525 ZNF274Q96GC6 653 aaPredicted RBP28.26■■■□□ 2.11
PVT1-204ENST00000517525 SPATA33Q96N06 139 aa28.26■■■□□ 2.11
PVT1-204ENST00000517525 HIPK3Q9H422 1215 aa28.26■■■□□ 2.11
PVT1-204ENST00000517525 PCDHA6Q9UN73 950 aa28.26■■■□□ 2.11
PVT1-204ENST00000517525 PCDHA8Q9Y5H6 950 aa28.26■■■□□ 2.11
PVT1-204ENST00000517525 ESYT2A0FGR8 921 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 SCG2P13521 617 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 IFNAR1P17181 557 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 UBE2SQ16763 222 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 HSDL1Q3SXM5 330 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 METTL7BQ6UX53 244 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 LRCH3Q96II8 777 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 ZFP91Q96JP5 570 aaPredicted RBP28.25■■■□□ 2.11
PVT1-204ENST00000517525 CDHR1Q96JP9 859 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 KATNAL1Q9BW62 490 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 EHMT1Q9H9B1 1298 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 UBIAD1Q9Y5Z9 338 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 LAMA3Q16787 3333 aa28.25■■■□□ 2.11
PVT1-204ENST00000517525 MAFGO15525 162 aa28.24■■■□□ 2.11
PVT1-204ENST00000517525 ADCY7P51828 1080 aa28.24■■■□□ 2.11
PVT1-204ENST00000517525 PKN1Q16512 942 aa28.24■■■□□ 2.11
PVT1-204ENST00000517525 GIMAP8Q8ND71 665 aaPredicted RBP28.24■■■□□ 2.11
PVT1-204ENST00000517525 RNF26Q9BY78 433 aaPredicted RBP28.24■■■□□ 2.11
PVT1-204ENST00000517525 MLXIPQ9HAP2 919 aa28.24■■■□□ 2.11
PVT1-204ENST00000517525 TRMT13Q9NUP7 481 aaKnown RBP28.24■■■□□ 2.11
PVT1-204ENST00000517525 RTEL1Q9NZ71 1219 aa28.24■■■□□ 2.11
PVT1-204ENST00000517525 SMCO2A6NFE2 343 aa28.23■■■□□ 2.11
PVT1-204ENST00000517525 CLK2P49760 499 aaKnown RBP28.23■■■□□ 2.11
PVT1-204ENST00000517525 AP3B2Q13367 1082 aa28.23■■■□□ 2.11
PVT1-204ENST00000517525 PPP1R12CQ9BZL4 782 aa28.23■■■□□ 2.11
PVT1-204ENST00000517525 ITGB5P18084 799 aa28.22■■■□□ 2.11
PVT1-204ENST00000517525 CYP2C18P33260 490 aa28.22■■■□□ 2.11
PVT1-204ENST00000517525 PSEN2P49810 448 aa28.22■■■□□ 2.11
PVT1-204ENST00000517525 C16orf59Q7L2K0 433 aa28.22■■■□□ 2.11
PVT1-204ENST00000517525 ZMYND12Q9H0C1 365 aa28.22■■■□□ 2.11
PVT1-204ENST00000517525 CSF2RAP15509 400 aa28.21■■■□□ 2.11
PVT1-204ENST00000517525 FAM47CQ5HY64 1035 aa28.21■■■□□ 2.11
PVT1-204ENST00000517525 MCTP2Q6DN12 878 aa28.21■■■□□ 2.11
PVT1-204ENST00000517525 CCDC12Q8WUD4 166 aaPredicted RBP28.21■■■□□ 2.11
PVT1-204ENST00000517525 C16orf70Q9BSU1 422 aa28.21■■■□□ 2.11
PVT1-204ENST00000517525 UPF3BQ9BZI7 483 aaKnown RBP28.21■■■□□ 2.11
PVT1-204ENST00000517525 JADE2Q9NQC1 790 aa28.21■■■□□ 2.11
PVT1-204ENST00000517525 PDRG1Q9NUG6 133 aa28.21■■■□□ 2.11
PVT1-204ENST00000517525 PITPNM1O00562 1244 aa28.2■■■□□ 2.1
PVT1-204ENST00000517525 MFSD10Q14728 455 aa28.2■■■□□ 2.1
PVT1-204ENST00000517525 RASIP1Q5U651 963 aa28.2■■■□□ 2.1
PVT1-204ENST00000517525 FAM109BQ6ICB4 259 aaPredicted RBP28.2■■■□□ 2.1
PVT1-204ENST00000517525 WNT8AQ9H1J5 351 aa28.2■■■□□ 2.1
PVT1-204ENST00000517525 BCAS3Q9H6U6 928 aa28.2■■■□□ 2.1
PVT1-204ENST00000517525 IL23AQ9NPF7 189 aa28.2■■■□□ 2.1
PVT1-204ENST00000517525 GTF2IRD1Q9UHL9 959 aa28.2■■■□□ 2.1
PVT1-204ENST00000517525 TMEM240Q5SV17 173 aa28.19■■■□□ 2.1
PVT1-204ENST00000517525 PSRC1Q6PGN9 363 aaPredicted RBP28.19■■■□□ 2.1
PVT1-204ENST00000517525 CYFIP1Q7L576 1253 aa28.19■■■□□ 2.1
PVT1-204ENST00000517525 CTAGE1Q96RT6 745 aa28.19■■■□□ 2.1
PVT1-204ENST00000517525 GPR20Q99678 358 aa28.19■■■□□ 2.1
PVT1-204ENST00000517525 UMODL1Q5DID0 1318 aa28.18■■■□□ 2.1
PVT1-204ENST00000517525 ZNF286BP0CG31 522 aa28.18■■■□□ 2.1
PVT1-204ENST00000517525 CYP2C9P11712 490 aa28.18■■■□□ 2.1
PVT1-204ENST00000517525 KCNA2P16389 499 aa28.18■■■□□ 2.1
PVT1-204ENST00000517525 SREBF1P36956 1147 aa28.18■■■□□ 2.1
PVT1-204ENST00000517525 SMAD3P84022 425 aaKnown RBP28.18■■■□□ 2.1
PVT1-204ENST00000517525 AKAP17AQ02040 695 aaKnown RBP28.18■■■□□ 2.1
PVT1-204ENST00000517525 RBL2Q08999 1139 aa28.18■■■□□ 2.1
PVT1-204ENST00000517525 KIAA0753Q2KHM9 967 aa28.18■■■□□ 2.1
PVT1-204ENST00000517525 PHKBQ93100 1093 aa28.18■■■□□ 2.1
PVT1-204ENST00000517525 RNPC3Q96LT9 517 aaKnown RBP28.18■■■□□ 2.1
PVT1-204ENST00000517525 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.18■■■□□ 2.18e-8■■■□□ 15.3
PVT1-204ENST00000517525 ANO3Q9BYT9 981 aa28.18■■■□□ 2.1
PVT1-204ENST00000517525 CCT2P78371 535 aaKnown RBP28.17■■■□□ 2.1
PVT1-204ENST00000517525 PTGISQ16647 500 aa28.17■■■□□ 2.1
PVT1-204ENST00000517525 GDF6Q6KF10 455 aaPredicted RBP28.17■■■□□ 2.1
PVT1-204ENST00000517525 FAM177A1Q8N128 213 aaPredicted RBP28.17■■■□□ 2.1
PVT1-204ENST00000517525 C7orf31Q8N865 590 aa28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms