RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 UPK3BL2E5RIL1 263 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 MATN2O00339 956 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 MEIS1O00470 390 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 ZNF888P0CJ79 500 aaPredicted RBP0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 EIF1AXP47813 144 aaKnown RBP0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 TNNI2P48788 182 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 SCNN1GP51170 649 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 ZNF134P52741 427 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 CORO7P57737 925 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 NOLC1Q14978 699 aaKnown RBP eCLIP0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 NOM1Q5C9Z4 860 aaKnown RBP0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 RTP2Q5QGT7 225 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 PHACTR4Q8IZ21 702 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 SYNE4Q8N205 404 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 ACRBPQ8NEB7 543 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 CLIC6Q96NY7 704 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 EBF3Q9H4W6 596 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 PLA2G3Q9NZ20 509 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 ICKQ9UPZ9 632 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 MAFBQ9Y5Q3 323 aaPredicted RBP0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 KLF2Q9Y5W3 355 aaPredicted RBP0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 SNCAIPQ9Y6H5 919 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 TRAF5O00463 557 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 C1QL1O75973 258 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 CGAP01215 116 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 ITGB1P05556 798 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 CELA3AP09093 270 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 ENDOUP21128 410 aaKnown RBP0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 HHEXQ03014 270 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 KLF9Q13886 244 aaPredicted RBP0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 ETFDHQ16134 617 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 SLC44A4Q53GD3 710 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 Q6ZRM9 215 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 LRRC55Q6ZSA7 311 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 CABP7Q86V35 215 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 NETO2Q8NC67 525 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 THAP3Q8WTV1 239 aaPredicted RBP0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 TAF15Q92804 592 aaKnown RBP eCLIP0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 ALG13Q9NP73 1137 aaKnown RBP0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 PCDHB5Q9Y5E4 795 aa0.73□□□□□ -2.29
RNU6-539P-201ENST00000516665 POM121CA8CG34 1229 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 ENC1O14682 589 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 GADD45BO75293 160 aaPredicted RBP0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 VAV1P15498 845 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 CXCR5P32302 372 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 CTSKP43235 329 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 ADCY1Q08828 1119 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 SRSF7Q16629 238 aaKnown RBP eCLIP0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 ERCC6LQ2NKX8 1250 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 CR1LQ2VPA4 569 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 ZNF260Q3ZCT1 412 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 ZNF568Q3ZCX4 644 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 ATXN7L2Q5T6C5 722 aaPredicted RBP0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 PI16Q6UXB8 463 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 GSPT2Q8IYD1 628 aaKnown RBP0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 D2HGDHQ8N465 521 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 RETREG2Q8NC44 543 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 KREMEN2Q8NCW0 462 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 SUPT20HQ8NEM7 779 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 GAL3ST3Q96A11 431 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 CCDC74AQ96AQ1 378 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 AJUBAQ96IF1 538 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 CTAGE1Q96RT6 745 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 C12orf65Q9H3J6 166 aaKnown RBP0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 IGSF5Q9NSI5 407 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 FZD1Q9UP38 647 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 RWDD3Q9Y3V2 267 aa0.72□□□□□ -2.29
RNU6-539P-201ENST00000516665 WIPF3A6NGB9 483 aa0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 GFRA2O00451 464 aa0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 CYP27B1O15528 508 aa0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 SMAD6O43541 496 aaKnown RBP0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 CELA2AP08217 269 aa0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 MPSTP25325 297 aa0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 RPS19P39019 145 aaKnown RBP0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 PROK1P58294 105 aa0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 EZH2Q15910 746 aaKnown RBP0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 CRTC3Q6UUV7 619 aa0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 ARHGEF25Q86VW2 580 aa0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 DBF4BQ8NFT6 615 aa0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 TFIP11Q9UBB9 837 aaKnown RBP0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 SEPT3Q9UH03 358 aa0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 TRAK1Q9UPV9 953 aa0.71□□□□□ -2.3
RNU6-539P-201ENST00000516665 SIGLEC6O43699 453 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 CYP7B1O75881 506 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 USP14P54578 494 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 FOXI1Q12951 378 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 LRRC14Q15048 493 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 WWC2Q6AWC2 1192 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 GJD3Q8N144 294 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 FAM13CQ8NE31 585 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 FBXO18Q8NFZ0 1043 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 NLGN2Q8NFZ4 835 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 FAM200AQ8TCP9 573 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 MARK4Q96L34 752 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 CXXC1Q9P0U4 656 aaPredicted RBP0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 TLK1Q9UKI8 766 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 AKAP2Q9Y2D5 859 aa0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 EPN1Q9Y6I3 576 aaPredicted RBP0.7□□□□□ -2.3
RNU6-539P-201ENST00000516665 GSTM1P09488 218 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 ZEB1P37275 1124 aaPredicted RBP0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms