RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 BPIFA3Q9BQP9 254 aa13.83□□□□□ -0.2
USP53-209ENST00000514665 AP1M1Q9BXS5 423 aa13.83□□□□□ -0.2
USP53-209ENST00000514665 FAM196BA6NMK8 535 aa13.83□□□□□ -0.2
USP53-209ENST00000514665 USP17L5A8MUK1 530 aa13.83□□□□□ -0.2
USP53-209ENST00000514665 MYO1FO00160 1098 aa13.83□□□□□ -0.2
USP53-209ENST00000514665 BMP3P12645 472 aa13.83□□□□□ -0.2
USP53-209ENST00000514665 ANKRD20A3Q5VUR7 823 aa13.83□□□□□ -0.2
USP53-209ENST00000514665 MAIP1Q8WWC4 291 aa13.83□□□□□ -0.2
USP53-209ENST00000514665 TRIM6Q9C030 488 aaPredicted RBP13.83□□□□□ -0.2
USP53-209ENST00000514665 N4BP1O75113 896 aaKnown RBP13.82□□□□□ -0.2
USP53-209ENST00000514665 CLNS1AP54105 237 aaKnown RBP13.82□□□□□ -0.2
USP53-209ENST00000514665 TRIM28Q13263 835 aaKnown RBP13.82□□□□□ -0.2
USP53-209ENST00000514665 E4F1Q66K89 784 aaPredicted RBP13.82□□□□□ -0.2
USP53-209ENST00000514665 SMIM5Q71RC9 77 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 PROCA1Q8NCQ7 364 aaPredicted RBP13.82□□□□□ -0.2
USP53-209ENST00000514665 PAGR1Q9BTK6 254 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 WDR19Q8NEZ3 1342 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 USP17L15C9J2P7 530 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 USP17L13C9JLJ4 530 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 USP17L11C9JVI0 530 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 USP17L18D6R9N7 530 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 USP17L22D6RA61 530 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 USP17L17D6RBQ6 530 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 USP17L19D6RCP7 530 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 USP17L20D6RJB6 530 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 LMNB1P20700 586 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 NSFP46459 744 aaKnown RBP13.82□□□□□ -0.2
USP53-209ENST00000514665 DHX9Q08211 1270 aaKnown RBP13.82□□□□□ -0.2
USP53-209ENST00000514665 USP17L24Q0WX57 530 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 USP17L6PQ6QN14 398 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 VPS52Q8N1B4 723 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 NLGN1Q8N2Q7 840 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 METTL13Q8N6R0 699 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 SENP2Q9HC62 589 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 ANKFY1Q9P2R3 1169 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 RFX7Q2KHR2 1363 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 ADGRL3Q9HAR2 1447 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 CLTAP09496 248 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 TMOD1P28289 359 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 DDIT3P35638 169 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 SLC8A3P57103 927 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 GNPTABQ3T906 1256 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 CCDC14Q49A88 953 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 HDAC6Q9UBN7 1215 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 NFU1Q9UMS0 254 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 NDC80O14777 642 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 TRIM37O94972 964 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 SLCO1A2P46721 670 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 ITIH3Q06033 890 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 SNX1Q13596 522 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 SCYL2Q6P3W7 929 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 CLEC4GQ6UXB4 293 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 PHLDB2Q86SQ0 1253 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 GSPT2Q8IYD1 628 aaKnown RBP13.82□□□□□ -0.2
USP53-209ENST00000514665 CCDC110Q8TBZ0 833 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 RNF34Q969K3 372 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 ZNF653Q96CK0 615 aa13.82□□□□□ -0.2
USP53-209ENST00000514665 FDPSP14324 419 aaKnown RBP13.81□□□□□ -0.2
USP53-209ENST00000514665 IRX3P78415 501 aaPredicted RBP13.81□□□□□ -0.2
USP53-209ENST00000514665 LRRC63Q05C16 580 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 DMP1Q13316 513 aaPredicted RBP13.81□□□□□ -0.2
USP53-209ENST00000514665 GRAPQ13588 217 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 KRT26Q7Z3Y9 468 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 CCDC13Q8IYE1 715 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 GRAPLQ8TC17 118 aaPredicted RBP13.81□□□□□ -0.2
USP53-209ENST00000514665 NT5C1BQ96P26 610 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 TMEM260Q9NX78 707 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 TTLL3Q9Y4R7 772 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 CPS1P31327 1500 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 CDHR2Q9BYE9 1310 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 NNTQ13423 1086 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 CDC37Q16543 378 aaPredicted RBP13.81□□□□□ -0.2
USP53-209ENST00000514665 MAP7D1Q3KQU3 841 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 RSAD2Q8WXG1 361 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 ANO3Q9BYT9 981 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 CROCC2H7BZ55 1655 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 SERPING1P05155 500 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 CCZ1BP86790 482 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 CCZ1P86791 482 aaPredicted RBP13.81□□□□□ -0.2
USP53-209ENST00000514665 CTTNQ14247 550 aaKnown RBP13.81□□□□□ -0.2
USP53-209ENST00000514665 ZKSCAN8Q15776 578 aaPredicted RBP13.81□□□□□ -0.2
USP53-209ENST00000514665 PALM2Q8IXS6 379 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 PIGOQ8TEQ8 1089 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 MLXIPQ9HAP2 919 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 INTS9Q9NV88 658 aaKnown RBP13.81□□□□□ -0.2
USP53-209ENST00000514665 RAB20Q9NX57 234 aa13.81□□□□□ -0.2
USP53-209ENST00000514665 PTPRMP28827 1452 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 CPDO75976 1380 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 CTDNEP1O95476 244 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 APBA1Q02410 837 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 FMR1Q06787 632 aaKnown RBP eCLIP13.8□□□□□ -0.2
USP53-209ENST00000514665 CC2D2BQ6DHV5 1058 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 CDAN1Q8IWY9 1227 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 ANKRD35Q8N283 1001 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 CEP95Q96GE4 821 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 KLHL14Q9P2G3 628 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 IVNS1ABPQ9Y6Y0 642 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 PNMA6FA0A0J9YX94 578 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 ANTXR2P58335 489 aa13.8□□□□□ -0.2
USP53-209ENST00000514665 PTK2Q05397 1052 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms