RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 RAB44Q7Z6P3 723 aaPredicted RBP4.63□□□□□ -1.67
VCAN-209ENST00000513016 TTC30AQ86WT1 665 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 NLRP4Q96MN2 994 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 EDEM3Q9BZQ6 932 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 INPP5FQ9Y2H2 1132 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 WDR46O15213 610 aaKnown RBP4.63□□□□□ -1.67
VCAN-209ENST00000513016 CYBBP04839 570 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 CA4P22748 312 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 SLC16A2P36021 539 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 RGS2P41220 211 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 FAM83BQ5T0W9 1011 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.63□□□□□ -1.67
VCAN-209ENST00000513016 GPKOWQ92917 476 aaPredicted RBP eCLIP4.63□□□□□ -1.67
VCAN-209ENST00000513016 C16orf45Q96MC5 204 aaPredicted RBP4.63□□□□□ -1.67
VCAN-209ENST00000513016 ARFGAP3Q9NP61 516 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 DYRK4Q9NR20 520 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 HPCAL4Q9UM19 191 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 ANGPTL3Q9Y5C1 460 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 PPP2R3BQ9Y5P8 575 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 hCG_1642624A0A1W2PR95 340 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 TLDC2A0PJX2 215 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 DCDC2CA8MYV0 355 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 GH1P01241 217 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 GCLCP48506 637 aaPredicted RBP4.63□□□□□ -1.67
VCAN-209ENST00000513016 ORC2Q13416 577 aaPredicted RBP4.63□□□□□ -1.67
VCAN-209ENST00000513016 MTMR1Q13613 665 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 RPS6KA2Q15349 733 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 IER5Q5VY09 327 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 CCDC186Q7Z3E2 898 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 U2AF1L4Q8WU68 220 aaKnown RBP4.63□□□□□ -1.67
VCAN-209ENST00000513016 N4BP2L2Q92802 583 aaPredicted RBP4.63□□□□□ -1.67
VCAN-209ENST00000513016 ERO1AQ96HE7 468 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 CLSTN2Q9H4D0 955 aa4.63□□□□□ -1.67
VCAN-209ENST00000513016 PRPF3O43395 683 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 SRGAP2CP0DJJ0 459 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 SKIP12755 728 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 KRT17Q04695 432 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 ASPHQ12797 758 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 C9orf131Q5VYM1 1079 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 LRRC31Q6UY01 552 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 FAM20AQ96MK3 541 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 UIMC1Q96RL1 719 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 RAB17Q9H0T7 212 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 MRPL47Q9HD33 250 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 ZNF302Q9NR11 478 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 BCAP29Q9UHQ4 241 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 SERTAD1Q9UHV2 236 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 MAPK8IP1Q9UQF2 711 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 UTYO14607 1347 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 CHRNA5P30532 468 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 MAN1A1P33908 653 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 KPNA2P52292 529 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 PPP2R5CQ13362 524 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 SDE2Q6IQ49 451 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 HAUS6Q7Z4H7 955 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 GPRC5AQ8NFJ5 357 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 SKA2Q8WVK7 121 aaPredicted RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 GLT1D1Q96MS3 346 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 SEC62Q99442 399 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 MTA3Q9BTC8 594 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 TRPV6Q9H1D0 765 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 ADGBQ8N7X0 1667 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 C1orf167Q5SNV9 1468 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 TRIM28Q13263 835 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 DIXDC1Q155Q3 683 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 TTC23LQ6PF05 361 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 LARP4BQ92615 738 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 DPF3Q92784 378 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 ZNF560Q96MR9 790 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 PARVGQ9HBI0 331 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 TYW1Q9NV66 732 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 CEP104O60308 925 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 NOL3O60936 208 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 DPEP1P16444 411 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 EZH2Q15910 746 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 CCDC105Q8IYK2 499 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 FAM186BQ8IYM0 893 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 ZNF280CQ8ND82 737 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 PPP4R1Q8TF05 950 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 FAM151AQ8WW52 585 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 IFT81Q8WYA0 676 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 MSTO1Q9BUK6 570 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 OSBPL5Q9H0X9 879 aaPredicted RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 UBN1Q9NPG3 1134 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 TAB2Q9NYJ8 693 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 KDM5AP29375 1690 aaKnown RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 CNTNAP4Q9C0A0 1308 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 CDK12Q9NYV4 1490 aaPredicted RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 MANSC4A6NHS7 340 aaPredicted RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 H7C0C1 242 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 CSPG5O95196 566 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 H2AFZP0C0S5 128 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 RALAP11233 206 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 MARK3P27448 753 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 ATP5OP48047 213 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 GMPSP49915 693 aaPredicted RBP4.62□□□□□ -1.67
VCAN-209ENST00000513016 BFSP2Q13515 415 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 SCARF1Q14162 830 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 ZNF667Q5HYK9 610 aa4.62□□□□□ -1.67
VCAN-209ENST00000513016 BTBD8Q5XKL5 378 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms