RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 FAM170AA1A519 330 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 EBAG9O00559 213 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 RAD21O60216 631 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 KLRC1P26715 233 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 PICALMQ13492 652 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 FAM83BQ5T0W9 1011 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 FAM182BQ5T319 152 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 AMIGO3Q86WK7 504 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 MYOCDQ8IZQ8 938 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 ZIM3Q96PE6 472 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 CDCA7Q9BWT1 371 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 ZNF287Q9HBT7 754 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 NHSL1Q5SYE7 1610 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 PRLRP16471 622 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 EPHB4P54760 987 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 PPP4CP60510 307 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 GSTO1P78417 241 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 PPFIA1Q13136 1202 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 SLC9C1Q4G0N8 1177 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 HGSNATQ68CP4 663 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 RAD54LQ92698 747 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 CCDC43Q96MW1 224 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 KRT12Q99456 494 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 GOLPH3Q9H4A6 298 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 STK17AQ9UEE5 414 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 NPHP3-ACAD11A0A0J9YXS1 232 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 HEXIM1O94992 359 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 CFAP221Q4G0U5 840 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 TTMPQ5BVD1 217 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 PACSIN1Q9BY11 444 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 RTFDC1Q9BY42 306 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 NARFQ9UHQ1 456 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 E9PMD0 336 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 OPA1O60313 960 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 SLC16A2P36021 539 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 ADCY7P51828 1080 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 FKBP3Q00688 224 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 LRRC63Q05C16 580 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 KIAA0753Q2KHM9 967 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 ASTE1Q2TB18 679 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 SFMBT2Q5VUG0 894 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 KLHL7Q8IXQ5 586 aa10.22□□□□□ -0.77
LIMCH1-215ENST00000512632 A0A087X0T9 212 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 FAM228BP0C875 321 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 FAM98CQ17RN3 349 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 FAM26FQ5R3K3 315 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 RAB34Q9BZG1 259 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 COL4A3BPQ9Y5P4 624 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 SLURP2P0DP57 97 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 COASYQ13057 564 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 CFAP58Q5T655 872 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 TTBK2Q6IQ55 1244 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 CERS3Q8IU89 383 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 PANK4Q9NVE7 773 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 FAM169AQ9Y6X4 670 aa10.21□□□□□ -0.77
LIMCH1-215ENST00000512632 XIRP1Q702N8 1843 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 F8W031 263 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 PDHBP11177 359 aa10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 HERC4Q5GLZ8 1057 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 EMBQ6PCB8 327 aa10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 C16orf86Q6ZW13 317 aa10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 FAM133AQ8N9E0 248 aa10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 PPM1EQ8WY54 764 aa10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 CENPHQ9H3R5 247 aa10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 NOL4O94818 638 aa10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 LCA5LO95447 670 aa10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 NOP2P46087 812 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.21□□□□□ -0.78
LIMCH1-215ENST00000512632 GOLGA8KD6RF30 607 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 SHOX2O60902 331 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 FXR2P51116 673 aaKnown RBP eCLIP10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 NNTQ13423 1086 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 IFT20Q8IY31 132 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 BMP2KQ9NSY1 1161 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 PCDHA12Q9UN75 941 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 KIAA1024Q9UPX6 916 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 A0A1B0GUL6 1792 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 EIF3HO15372 352 aaKnown RBP eCLIP10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 PJA2O43164 708 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 ITIH3Q06033 890 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 KLHL30Q0D2K2 578 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 ZNF804AQ7Z570 1209 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 DNAJC19Q96DA6 116 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 IQCDQ96DY2 449 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 CD209Q9NNX6 404 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 SSU72P8A0A1W2PR75 194 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 SHTN1A0MZ66 631 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 NDUFAB1O14561 156 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 ACTN1P12814 892 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 MFSD14BQ5SR56 506 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 ARHGEF1Q92888 912 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 RIOX1Q9H6W3 641 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 RIC8AQ9NPQ8 531 aa10.2□□□□□ -0.78
LIMCH1-215ENST00000512632 UFL1O94874 794 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 KRT18P05783 430 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 AKR1B1P15121 316 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 EPS15P42566 896 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 HLTFQ14527 1009 aaKnown RBP eCLIP10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 TADA2BQ86TJ2 420 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 HAS1Q92839 578 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms