RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 UBXN2AP68543 259 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 SETQ01105 290 aaPredicted RBP8.16□□□□□ -1.1
NUP54-204ENST00000506098 CEBPZQ03701 1054 aaKnown RBP8.16□□□□□ -1.1
NUP54-204ENST00000506098 KIF22Q14807 665 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 STK38Q15208 465 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 ADALQ6DHV7 355 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 DPP9Q86TI2 863 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 SLFN12Q8IYM2 578 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 JMYQ8N9B5 988 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 NPLOC4Q8TAT6 608 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 CYP2W1Q8TAV3 490 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 ETNPPLQ8TBG4 499 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 HAS1Q92839 578 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 FERMT2Q96AC1 680 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 GPRASP2Q96D09 838 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 TRIM47Q96LD4 638 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 FAM20AQ96MK3 541 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 SYNGAP1Q96PV0 1343 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 LMBRD1Q9NUN5 540 aa8.16□□□□□ -1.1
NUP54-204ENST00000506098 FBXO2Q9UK22 296 aaPredicted RBP8.16□□□□□ -1.1
NUP54-204ENST00000506098 SCN10AQ9Y5Y9 1956 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 RBM47A0AV96 593 aaKnown RBP8.15□□□□□ -1.1
NUP54-204ENST00000506098 GOLGA6L22H0YM25 854 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 MSH4O15457 936 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 FIBPO43427 364 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 CUTAO60888 179 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 FKTNO75072 461 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 OR52Z1P0C646 297 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 ARP10275 920 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 TGFB3P10600 412 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 MYCLP12524 364 aaPredicted RBP8.15□□□□□ -1.1
NUP54-204ENST00000506098 RGS2P41220 211 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 FXR2P51116 673 aaKnown RBP eCLIP8.15□□□□□ -1.1
NUP54-204ENST00000506098 CAP1Q01518 475 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 PDE4DQ08499 809 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 SEMA3FQ13275 785 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 PDIA5Q14554 519 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 IL17AQ16552 155 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 CALCRLQ16602 461 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 PRR16Q569H4 304 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 AXDND1Q5T1B0 1012 aaPredicted RBP8.15□□□□□ -1.1
NUP54-204ENST00000506098 OLFML2BQ68BL8 750 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 NLRX1Q86UT6 975 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 PLA2G4DQ86XP0 818 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 IGSF22Q8N9C0 903 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 KRI1Q8N9T8 703 aaKnown RBP8.15□□□□□ -1.1
NUP54-204ENST00000506098 ZNF579Q8NAF0 562 aaKnown RBP8.15□□□□□ -1.1
NUP54-204ENST00000506098 SLC5A5Q92911 643 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 ERO1AQ96HE7 468 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 CDHR1Q96JP9 859 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 APBA2Q99767 749 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 WDR11Q9BZH6 1224 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 ARHGAP39Q9C0H5 1083 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 KATNBL1Q9H079 304 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 GDPD2Q9HCC8 539 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 KCNH7Q9NS40 1196 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 PCDHA7Q9UN72 937 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 MRVI1Q9Y6F6 885 aa8.15□□□□□ -1.1
NUP54-204ENST00000506098 CEP350Q5VT06 3117 aa8.15□□□□□ -1.11
NUP54-204ENST00000506098 NFASCO94856 1347 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 FAM237AA0A1B0GTK4 181 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 A0A1W2PQ27 194 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 A0A1W2PQ64 194 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 A0A1W2PQD8 194 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 SPATA31C2B4DYI2 1134 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 DHX15O43143 795 aaKnown RBP8.14□□□□□ -1.11
NUP54-204ENST00000506098 PSMD10O75832 226 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 SNAI1O95863 264 aaPredicted RBP8.14□□□□□ -1.11
NUP54-204ENST00000506098 PTMSP20962 102 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 HOXD10P28358 340 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 MARCKSP29966 332 aaPredicted RBP8.14□□□□□ -1.11
NUP54-204ENST00000506098 LONP1P36776 959 aaKnown RBP8.14□□□□□ -1.11
NUP54-204ENST00000506098 PRMT2P55345 433 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 SPIRE1Q08AE8 756 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 MTMR1Q13613 665 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 ARHGEF6Q15052 776 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 GNPTABQ3T906 1256 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 KCNV1Q6PIU1 500 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 B3GNT9Q6UX72 402 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 DTHD1Q6ZMT9 781 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 ARMCX2Q7L311 632 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 TRMT44Q8IYL2 757 aaKnown RBP8.14□□□□□ -1.11
NUP54-204ENST00000506098 CD99L2Q8TCZ2 262 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 ZNF296Q8WUU4 475 aaPredicted RBP8.14□□□□□ -1.11
NUP54-204ENST00000506098 AK8Q96MA6 479 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 RIT2Q99578 217 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 SENP7Q9BQF6 1050 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 TINF2Q9BSI4 451 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 BEGAINQ9BUH8 593 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 ABHD16BQ9H3Z7 469 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 AGO4Q9HCK5 861 aaKnown RBP8.14□□□□□ -1.11
NUP54-204ENST00000506098 VTA1Q9NP79 307 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 TBC1D22BQ9NU19 505 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 SRRDQ9UH36 339 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 PCDHA12Q9UN75 941 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 GABRQQ9UN88 632 aa8.14□□□□□ -1.11
NUP54-204ENST00000506098 DDX11L8A8MPP1 907 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 IPO5O00410 1097 aaKnown RBP8.13□□□□□ -1.11
NUP54-204ENST00000506098 SLC26A4O43511 780 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 RRP9O43818 475 aaKnown RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms