RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 GRB10Q13322 594 aa24.36■■□□□ 1.49
SQSTM1-210ENST00000506042 PGM5Q15124 567 aa24.36■■□□□ 1.49
SQSTM1-210ENST00000506042 ZNF215Q9UL58 517 aaPredicted RBP24.36■■□□□ 1.49
SQSTM1-210ENST00000506042 C17orf102A2RUQ5 167 aa24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 HAS3O00219 553 aa24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 RFXAPO00287 272 aa24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 IFIT3O14879 490 aaKnown RBP24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 LGR5O75473 907 aa24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 TFF2Q03403 129 aa24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 NEDD9Q14511 834 aa24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 MYSM1Q5VVJ2 828 aa24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 CATIPQ7Z7H3 387 aa24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 VSIG10LQ86VR7 867 aa24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 CUL5Q93034 780 aa24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 SAMD11Q96NU1 681 aa24.35■■□□□ 1.49
SQSTM1-210ENST00000506042 MYH7BA7E2Y1 1941 aa24.34■■□□□ 1.49
SQSTM1-210ENST00000506042 RSPH10B2B2RC85 870 aa24.34■■□□□ 1.49
SQSTM1-210ENST00000506042 RSPH10BP0C881 870 aa24.34■■□□□ 1.49
SQSTM1-210ENST00000506042 HOXD8P13378 290 aaPredicted RBP24.34■■□□□ 1.49
SQSTM1-210ENST00000506042 WTAPQ15007 396 aa24.34■■□□□ 1.49
SQSTM1-210ENST00000506042 PTPROQ16827 1216 aa24.34■■□□□ 1.49
SQSTM1-210ENST00000506042 USP26Q9BXU7 913 aa24.34■■□□□ 1.49
SQSTM1-210ENST00000506042 TTC28Q96AY4 2481 aa24.34■■□□□ 1.49
SQSTM1-210ENST00000506042 PNMA6FA0A0J9YX94 578 aa24.33■■□□□ 1.49
SQSTM1-210ENST00000506042 PALM3A6NDB9 673 aaPredicted RBP24.33■■□□□ 1.49
SQSTM1-210ENST00000506042 THPOP40225 353 aa24.33■■□□□ 1.49
SQSTM1-210ENST00000506042 FCHSD1Q86WN1 690 aa24.33■■□□□ 1.49
SQSTM1-210ENST00000506042 GIMAP8Q8ND71 665 aaPredicted RBP24.33■■□□□ 1.49
SQSTM1-210ENST00000506042 NCOA7Q8NI08 942 aa24.33■■□□□ 1.49
SQSTM1-210ENST00000506042 SEPT8Q92599 483 aa24.33■■□□□ 1.49
SQSTM1-210ENST00000506042 ATP6V0A1Q93050 837 aa24.33■■□□□ 1.49
SQSTM1-210ENST00000506042 MTMR8Q96EF0 704 aa24.33■■□□□ 1.49
SQSTM1-210ENST00000506042 MAD2L2Q9UI95 211 aa24.33■■□□□ 1.49
SQSTM1-210ENST00000506042 H3BRB1 525 aa24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 NBNO60934 754 aa24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 HOXA13P31271 388 aaPredicted RBP24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 KIF5BP33176 963 aa24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 KCNQ1P51787 676 aa24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 ERVK-21P61565 698 aa24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 ZNF618Q5T7W0 954 aa24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 STAG2Q8N3U4 1231 aa24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 DHX38Q92620 1227 aaKnown RBP24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 TUT1Q9H6E5 874 aaKnown RBP24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 SEC63Q9UGP8 760 aaKnown RBP24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 HCN4Q9Y3Q4 1203 aa24.32■■□□□ 1.48
SQSTM1-210ENST00000506042 VCANP13611 3396 aa24.31■■□□□ 1.48
SQSTM1-210ENST00000506042 DEFB103AP81534 67 aa24.31■■□□□ 1.48
SQSTM1-210ENST00000506042 GRM4Q14833 912 aa24.31■■□□□ 1.48
SQSTM1-210ENST00000506042 SEC23AQ15436 765 aa24.31■■□□□ 1.48
SQSTM1-210ENST00000506042 HSDL1Q3SXM5 330 aa24.31■■□□□ 1.48
SQSTM1-210ENST00000506042 XRRA1Q6P2D8 792 aa24.31■■□□□ 1.48
SQSTM1-210ENST00000506042 SERINC5Q86VE9 423 aa24.31■■□□□ 1.48
SQSTM1-210ENST00000506042 UBA1P22314 1058 aaKnown RBP24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 MYOCDQ8IZQ8 938 aa24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 FBXO22Q8NEZ5 403 aa24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 CTCFLQ8NI51 663 aaPredicted RBP24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 APBB2Q92870 758 aa24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 FAM122AQ96E09 287 aa24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 CTAGE1Q96RT6 745 aa24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 RIOX1Q9H6W3 641 aa24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 MTUS1Q9ULD2 1270 aa24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 FAM50BQ9Y247 325 aa24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 CHD9Q3L8U1 2897 aa24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 COL4A4P53420 1690 aaPredicted RBP24.3■■□□□ 1.48
SQSTM1-210ENST00000506042 FIBPO43427 364 aa24.29■■□□□ 1.48
SQSTM1-210ENST00000506042 PUS10Q3MIT2 529 aaKnown RBP24.29■■□□□ 1.48
SQSTM1-210ENST00000506042 NLRX1Q86UT6 975 aa24.29■■□□□ 1.48
SQSTM1-210ENST00000506042 SMARCC2Q8TAQ2 1214 aa24.29■■□□□ 1.48
SQSTM1-210ENST00000506042 GDPD5Q8WTR4 605 aa24.29■■□□□ 1.48
SQSTM1-210ENST00000506042 CDHR1Q96JP9 859 aa24.29■■□□□ 1.48
SQSTM1-210ENST00000506042 PIGSQ96S52 555 aa24.29■■□□□ 1.48
SQSTM1-210ENST00000506042 TCF20Q9UGU0 1960 aaKnown RBP24.29■■□□□ 1.48
SQSTM1-210ENST00000506042 TET1Q8NFU7 2136 aa24.28■■□□□ 1.48
SQSTM1-210ENST00000506042 LINC01553A4QN01 128 aa24.28■■□□□ 1.48
SQSTM1-210ENST00000506042 EPOPA6NHQ4 379 aa24.28■■□□□ 1.48
SQSTM1-210ENST00000506042 FAM117BQ6P1L5 589 aa24.28■■□□□ 1.48
SQSTM1-210ENST00000506042 METTL7BQ6UX53 244 aa24.28■■□□□ 1.48
SQSTM1-210ENST00000506042 RSPH3Q86UC2 560 aa24.28■■□□□ 1.48
SQSTM1-210ENST00000506042 RRP36Q96EU6 259 aaKnown RBP24.28■■□□□ 1.48
SQSTM1-210ENST00000506042 YME1L1Q96TA2 773 aa24.28■■□□□ 1.48
SQSTM1-210ENST00000506042 LZTS2Q9BRK4 669 aa24.28■■□□□ 1.48
SQSTM1-210ENST00000506042 SIP14410 1827 aa24.28■■□□□ 1.48
SQSTM1-210ENST00000506042 PRRC2BQ5JSZ5 2229 aaKnown RBP24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 LCHNA4D1U4 455 aa24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 OPLAHO14841 1288 aa24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 IGHDP01880 384 aa24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 LGALS2P05162 132 aa24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 RPLP2P05387 115 aaKnown RBP24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 GNAQP50148 359 aa24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 TRIM71Q2Q1W2 868 aaKnown RBP24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 TIGD5Q53EQ6 642 aa24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 DBF4BQ8NFT6 615 aa24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 TNPO1Q92973 898 aaKnown RBP24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 MAP3K14Q99558 947 aa24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 C16orf70Q9BSU1 422 aa24.27■■□□□ 1.48
SQSTM1-210ENST00000506042 SMIM10L2AP0DMW4 78 aa24.26■■□□□ 1.47
SQSTM1-210ENST00000506042 SMIM10L2BP0DMW5 78 aa24.26■■□□□ 1.47
SQSTM1-210ENST00000506042 ICAM3P32942 547 aa24.26■■□□□ 1.47
SQSTM1-210ENST00000506042 PLEKHG4Q58EX7 1191 aa24.26■■□□□ 1.47
SQSTM1-210ENST00000506042 TTC22Q5TAA0 569 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms