RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MKRN2Q9H000 416 aaKnown RBP5.51□□□□□ -1.53
USP54-217ENST00000498213 PCDHA11Q9Y5I1 949 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 BRCA1P38398 1863 aaKnown RBP5.51□□□□□ -1.53
USP54-217ENST00000498213 DOT1LQ8TEK3 1739 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 RNF123Q5XPI4 1314 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 CACNA1AO00555 2505 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 THSD7BQ9C0I4 1608 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 H0YGN5 161 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 RBAK-RBAKDNI3L0D1 243 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 UBOX5O94941 541 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 SRFP11831 508 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 IMPDH2P12268 514 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 DUSP4Q13115 394 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 GAB4Q2WGN9 574 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 ZNF394Q53GI3 561 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 CDCP2Q5VXM1 449 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 SYDE1Q6ZW31 735 aaPredicted RBP5.5□□□□□ -1.53
USP54-217ENST00000498213 SAPCD2Q86UD0 394 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 PNMA8AQ86V59 439 aaPredicted RBP5.5□□□□□ -1.53
USP54-217ENST00000498213 C1QL4Q86Z23 238 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 MYLIPQ8WY64 445 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 ATG4CQ96DT6 458 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 FERD3LQ96RJ6 166 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 ADAMTS10Q9H324 1103 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 CNNM2Q9H8M5 875 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 C19orf73Q9NVV2 129 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 RNF186Q9NXI6 227 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 SRP68Q9UHB9 627 aaKnown RBP5.5□□□□□ -1.53
USP54-217ENST00000498213 PCDHGB7Q9Y5F8 929 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 TIAM2Q8IVF5 1701 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 CEP290O15078 2479 aa5.5□□□□□ -1.53
USP54-217ENST00000498213 C4AP0C0L4 1744 aa5.49□□□□□ -1.53
USP54-217ENST00000498213 SCAMP3O14828 347 aaKnown RBP5.49□□□□□ -1.53
USP54-217ENST00000498213 CELF2O95319 508 aaKnown RBP5.49□□□□□ -1.53
USP54-217ENST00000498213 CCNFP41002 786 aa5.49□□□□□ -1.53
USP54-217ENST00000498213 PRR23BQ6ZRT6 265 aa5.49□□□□□ -1.53
USP54-217ENST00000498213 LCNL1Q6ZST4 164 aa5.49□□□□□ -1.53
USP54-217ENST00000498213 C2CD5Q86YS7 1000 aa5.49□□□□□ -1.53
USP54-217ENST00000498213 SLITRK4Q8IW52 837 aa5.49□□□□□ -1.53
USP54-217ENST00000498213 ENOX1Q8TC92 643 aaKnown RBP5.49□□□□□ -1.53
USP54-217ENST00000498213 PIGBQ92521 554 aa5.49□□□□□ -1.53
USP54-217ENST00000498213 EAF1Q96JC9 268 aaPredicted RBP5.49□□□□□ -1.53
USP54-217ENST00000498213 ZNF408Q9H9D4 720 aa5.49□□□□□ -1.53
USP54-217ENST00000498213 HDAC9Q9UKV0 1011 aa5.49□□□□□ -1.53
USP54-217ENST00000498213 UBR3Q6ZT12 1888 aa5.49□□□□□ -1.53
USP54-217ENST00000498213 TTC21BQ7Z4L5 1316 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 ZNF541Q9H0D2 1346 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 MKI67P46013 3256 aaKnown RBP5.48□□□□□ -1.53
USP54-217ENST00000498213 SHISA3A0PJX4 238 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 FAM86C2PA6NEL3 165 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 ZSCAN22P10073 491 aaPredicted RBP5.48□□□□□ -1.53
USP54-217ENST00000498213 NME1P15531 152 aaKnown RBP5.48□□□□□ -1.53
USP54-217ENST00000498213 NOGQ13253 232 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 NBPF12Q5TAG4 269 aaPredicted RBP5.48□□□□□ -1.53
USP54-217ENST00000498213 LILRA6Q6PI73 481 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 SIAH1Q8IUQ4 282 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 PDZD8Q8NEN9 1154 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 SYTL5Q8TDW5 730 aaPredicted RBP5.48□□□□□ -1.53
USP54-217ENST00000498213 ZNF622Q969S3 477 aaKnown RBP eCLIP5.48□□□□□ -1.53
USP54-217ENST00000498213 FAM122AQ96E09 287 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 ZNF512BQ96KM6 892 aaPredicted RBP5.48□□□□□ -1.53
USP54-217ENST00000498213 PUS7Q96PZ0 661 aaKnown RBP5.48□□□□□ -1.53
USP54-217ENST00000498213 TAOK3Q9H2K8 898 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 ZMYM5Q9UJ78 669 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 FBXL21Q9UKT6 434 aa5.48□□□□□ -1.53
USP54-217ENST00000498213 FITM1A5D6W6 292 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 MEIS3P2A8K0S8 358 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 H0YIN7 160 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 POLRMTO00411 1230 aaKnown RBP5.47□□□□□ -1.53
USP54-217ENST00000498213 EN2P19622 333 aaPredicted RBP5.47□□□□□ -1.53
USP54-217ENST00000498213 RPL10P27635 214 aaKnown RBP5.47□□□□□ -1.53
USP54-217ENST00000498213 PLA2G5P39877 138 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 PCBP3P57721 371 aaKnown RBP5.47□□□□□ -1.53
USP54-217ENST00000498213 ERVFC1P60507 584 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 KIF23Q02241 960 aaPredicted RBP5.47□□□□□ -1.53
USP54-217ENST00000498213 CHRNEQ04844 493 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 RNF111Q6ZNA4 994 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 SPPL2CQ8IUH8 684 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 ZNF654Q8IZM8 581 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 USHBP1Q8N6Y0 703 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 DHRS1Q96LJ7 313 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 SLC6A18Q96N87 628 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 DIRC2Q96SL1 478 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 NSUN3Q9H649 340 aaKnown RBP5.47□□□□□ -1.53
USP54-217ENST00000498213 ANTXR1Q9H6X2 564 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 ASAP1Q9ULH1 1129 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 PCDHB12Q9Y5F1 795 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 TTC21AQ8NDW8 1320 aa5.47□□□□□ -1.53
USP54-217ENST00000498213 TAF1LQ8IZX4 1826 aa5.46□□□□□ -1.53
USP54-217ENST00000498213 SBNO2Q9Y2G9 1366 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 NFIBO00712 420 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 RPS6KA4O75676 772 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 RECKO95980 971 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 HPXP02790 462 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 ZGLP1P0C6A0 271 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 C1QTNF9P0C862 333 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 VAMP1P23763 118 aa5.46□□□□□ -1.54
USP54-217ENST00000498213 TRIM26Q12899 539 aaPredicted RBP5.46□□□□□ -1.54
USP54-217ENST00000498213 PKN2Q16513 984 aaKnown RBP5.46□□□□□ -1.54
USP54-217ENST00000498213 NBPF9Q3BBW0 867 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms