RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 DHX36Q9H2U1 1008 aaKnown RBP17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 PSD3Q9NYI0 1048 aa17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 RIN2Q8WYP3 895 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 MASTLQ96GX5 879 aa17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 FUT8Q9BYC5 575 aa17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 TDRD3Q9H7E2 651 aaKnown RBP17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 DISC1Q9NRI5 854 aa17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 ACTN4O43707 911 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 SPOPO43791 374 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 FOSP01100 380 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 PRR29P0C7W0 189 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 NKIRAS1Q9NYS0 192 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 STK24Q9Y6E0 443 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 MROH7-TTC4A0A0A0MT08 1334 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 MST1RQ04912 1400 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 NR1D1P20393 614 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 HOXA13P31271 388 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 TXNRD1Q16881 649 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 TBC1D10BQ4KMP7 808 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 CUEDC2Q9H467 287 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 HDAC6Q9UBN7 1215 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 SRBD1Q8N5C6 995 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 GH2P01242 217 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 ADRA2BP18089 450 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 ACTN3Q08043 901 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 KRT31Q15323 416 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 ARL6IP4Q66PJ3 421 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 CCDC63Q8NA47 563 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 MGARPQ8TDB4 240 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 MTA3Q9BTC8 594 aa17.84■□□□□ 0.45
CCDC88B-209ENST00000494080 PP2D1A8MPX8 630 aa17.83■□□□□ 0.45
CCDC88B-209ENST00000494080 EHHADHQ08426 723 aa17.83■□□□□ 0.45
CCDC88B-209ENST00000494080 AP1ARQ63HQ0 302 aa17.83■□□□□ 0.45
CCDC88B-209ENST00000494080 TRIM68Q6AZZ1 485 aa17.83■□□□□ 0.45
CCDC88B-209ENST00000494080 INTS5Q6P9B9 1019 aaKnown RBP17.83■□□□□ 0.45
CCDC88B-209ENST00000494080 GUCY2CP25092 1073 aa17.83■□□□□ 0.44
CCDC88B-209ENST00000494080 CRKP46108 304 aa17.83■□□□□ 0.44
CCDC88B-209ENST00000494080 WDR44Q5JSH3 913 aa17.83■□□□□ 0.44
CCDC88B-209ENST00000494080 PEX26Q7Z412 305 aa17.83■□□□□ 0.44
CCDC88B-209ENST00000494080 DPH5Q9H2P9 285 aa17.83■□□□□ 0.44
CCDC88B-209ENST00000494080 RABGAP1Q9Y3P9 1069 aa17.83■□□□□ 0.44
CCDC88B-209ENST00000494080 COL4A3BPQ9Y5P4 624 aa17.83■□□□□ 0.44
CCDC88B-209ENST00000494080 CDC37Q16543 378 aaPredicted RBP17.83■□□□□ 0.44
CCDC88B-209ENST00000494080 HIBCHQ6NVY1 386 aaPredicted RBP17.83■□□□□ 0.44
CCDC88B-209ENST00000494080 COG1Q8WTW3 980 aa17.83■□□□□ 0.44
CCDC88B-209ENST00000494080 ABCB4P21439 1286 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 RASSF7Q02833 373 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 DHTKD1Q96HY7 919 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 ZNF512BQ96KM6 892 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 CXorf56Q9H5V9 222 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 CTTNBP2NLQ9P2B4 639 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 NOP56O00567 594 aaKnown RBP17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 RGS16O15492 202 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 ARHGEF16Q5VV41 709 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 MAGEF1Q9HAY2 307 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 POTEMA6NI47 508 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 USP17L15C9J2P7 530 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 USP17L13C9JLJ4 530 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 USP17L11C9JVI0 530 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 USP17L18D6R9N7 530 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 USP17L22D6RA61 530 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 USP17L17D6RBQ6 530 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 USP17L19D6RCP7 530 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 USP17L20D6RJB6 530 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 USP17L24Q0WX57 530 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 C12orf60Q5U649 245 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 ZNF772Q68DY9 489 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 PRR5LQ6MZQ0 368 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 USP17L6PQ6QN14 398 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 GSTA5Q7RTV2 222 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 SLC24A3Q9HC58 644 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 PNMA6FA0A0J9YX94 578 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 UBE2Q2LH0YL09 131 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 GNA14O95837 355 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 KLRK1P26718 216 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 ALS2CLQ60I27 953 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 UHMK1Q8TAS1 419 aaKnown RBP17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 STIM2Q9P246 746 aa17.82■□□□□ 0.44
CCDC88B-209ENST00000494080 NR2F2P24468 414 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 EEF1GP26641 437 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 USP14P54578 494 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 CASP7P55210 303 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 STRN3Q13033 797 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 XKR9Q5GH70 373 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 ODR4Q5SWX8 454 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 FAM102BQ5T8I3 360 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 PPFIBP2Q8ND30 876 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 SMCR8Q8TEV9 937 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 ZNF446Q9NWS9 450 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 LARSQ9P2J5 1176 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 EXOC7Q9UPT5 735 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 VPS72Q15906 364 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 REXO1L1PQ8IX06 675 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 PAGR1Q9BTK6 254 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 DNAI2Q9GZS0 605 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 ABHD10Q9NUJ1 306 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 SPATS2LQ9NUQ6 558 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 TMEM260Q9NX78 707 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 KRIT1O00522 736 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 ALDH3A1P30838 453 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms