RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ADGRE1Q14246 886 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 WTAPQ15007 396 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 KIAA0753Q2KHM9 967 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 HOMER1Q86YM7 354 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 NCOA7Q8NI08 942 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 ADAMTS19Q8TE59 1207 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 ARNTL2Q8WYA1 636 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 CUL5Q93034 780 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 SPATA33Q96N06 139 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 ALG1Q9BT22 464 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 LAMA4Q16363 1823 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 F2P00734 622 aa13.4□□□□□ -0.26
COL6A3-213ENST00000493475 IGHDP01880 384 aa13.4□□□□□ -0.26
COL6A3-213ENST00000493475 KIF5BP33176 963 aa13.4□□□□□ -0.26
COL6A3-213ENST00000493475 GHRHRQ02643 423 aa13.4□□□□□ -0.26
COL6A3-213ENST00000493475 RBL2Q08999 1139 aa13.4□□□□□ -0.26
COL6A3-213ENST00000493475 GDF6Q6KF10 455 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-213ENST00000493475 STOX1Q6ZVD7 989 aa13.4□□□□□ -0.26
COL6A3-213ENST00000493475 PDCD2LQ9BRP1 358 aa13.4□□□□□ -0.26
COL6A3-213ENST00000493475 COL20A1Q9P218 1284 aa13.4□□□□□ -0.26
COL6A3-213ENST00000493475 SEC63Q9UGP8 760 aaKnown RBP13.4□□□□□ -0.26
COL6A3-213ENST00000493475 LCTP09848 1927 aa13.4□□□□□ -0.26
COL6A3-213ENST00000493475 SCN10AQ9Y5Y9 1956 aa13.4□□□□□ -0.27
COL6A3-213ENST00000493475 PNMA6FA0A0J9YX94 578 aa13.39□□□□□ -0.27
COL6A3-213ENST00000493475 GGPS1O95749 300 aa13.39□□□□□ -0.27
COL6A3-213ENST00000493475 CKBP12277 381 aa13.39□□□□□ -0.27
COL6A3-213ENST00000493475 MYOGP15173 224 aa13.39□□□□□ -0.27
COL6A3-213ENST00000493475 POU3F3P20264 500 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-213ENST00000493475 NEDD9Q14511 834 aa13.39□□□□□ -0.27
COL6A3-213ENST00000493475 TTC22Q5TAA0 569 aa13.39□□□□□ -0.27
COL6A3-213ENST00000493475 CASC1Q6TDU7 716 aa13.39□□□□□ -0.27
COL6A3-213ENST00000493475 VSIG10LQ86VR7 867 aa13.39□□□□□ -0.27
COL6A3-213ENST00000493475 CTCFLQ8NI51 663 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-213ENST00000493475 EXOC6Q8TAG9 804 aa13.39□□□□□ -0.27
COL6A3-213ENST00000493475 TBC1D5Q92609 795 aa13.39□□□□□ -0.27
COL6A3-213ENST00000493475 HDAC6Q9UBN7 1215 aa13.39□□□□□ -0.27
COL6A3-213ENST00000493475 ZNF215Q9UL58 517 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-213ENST00000493475 C17orf102A2RUQ5 167 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 PALM3A6NDB9 673 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-213ENST00000493475 CAND2O75155 1236 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 AMHP03971 560 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 ZNF286BP0CG31 522 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 GNAQP50148 359 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 WDR5P61964 334 aaKnown RBP13.38□□□□□ -0.27
COL6A3-213ENST00000493475 GRM4Q14833 912 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 PGM5Q15124 567 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 CELF3Q5SZQ8 465 aaKnown RBP13.38□□□□□ -0.27
COL6A3-213ENST00000493475 FCHSD1Q86WN1 690 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 STAG2Q8N3U4 1231 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 GIMAP8Q8ND71 665 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-213ENST00000493475 SMARCC2Q8TAQ2 1214 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 KAT2BQ92831 832 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 RRP36Q96EU6 259 aaKnown RBP13.38□□□□□ -0.27
COL6A3-213ENST00000493475 RAD9AQ99638 391 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 LZTS2Q9BRK4 669 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 USP26Q9BXU7 913 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 LMCD1Q9NZU5 365 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 MAD2L2Q9UI95 211 aa13.38□□□□□ -0.27
COL6A3-213ENST00000493475 CHD9Q3L8U1 2897 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 CXCL10P02778 98 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 HOXA13P31271 388 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-213ENST00000493475 TAP1Q03518 808 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 SEC23AQ15436 765 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 MYSM1Q5VVJ2 828 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 XRRA1Q6P2D8 792 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 TMTC2Q8N394 836 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 HLA-CQ95604 372 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 MTMR8Q96EF0 704 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 CDHR1Q96JP9 859 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 TGS1Q96RS0 853 aaKnown RBP13.37□□□□□ -0.27
COL6A3-213ENST00000493475 C1QTNF1Q9BXJ1 281 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 RIOX1Q9H6W3 641 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 CERS4Q9HA82 394 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 SCUBE2Q9NQ36 999 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 MTCH2Q9Y6C9 303 aa13.37□□□□□ -0.27
COL6A3-213ENST00000493475 SPTBN5Q9NRC6 3674 aaKnown RBP13.36□□□□□ -0.27
COL6A3-213ENST00000493475 TANC1Q9C0D5 1861 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 RSPH10B2B2RC85 870 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 H3BRB1 525 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 MAP3K13O43283 966 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 FIBPO43427 364 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 LGR5O75473 907 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 GJB5O95377 273 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 RSPH10BP0C881 870 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 HOXD8P13378 290 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-213ENST00000493475 UBA1P22314 1058 aaKnown RBP13.36□□□□□ -0.27
COL6A3-213ENST00000493475 THPOP40225 353 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 CYB5R4Q7L1T6 521 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 NLRX1Q86UT6 975 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 PPP1R13LQ8WUF5 828 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 TNPO1Q92973 898 aaKnown RBP13.36□□□□□ -0.27
COL6A3-213ENST00000493475 ATP6V0A1Q93050 837 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 PIGSQ96S52 555 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 MAP3K14Q99558 947 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 TUT1Q9H6E5 874 aaKnown RBP13.36□□□□□ -0.27
COL6A3-213ENST00000493475 INSL6Q9Y581 213 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 MYO9BQ13459 2157 aa13.36□□□□□ -0.27
COL6A3-213ENST00000493475 HAS3O00219 553 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 DDAH1O94760 285 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 CYP21A2P08686 494 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms