RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 POTEIP0CG38 1075 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 SLC12A1Q13621 1099 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 NLRP9Q7RTR0 991 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 NUDCD3Q8IVD9 361 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 PIP4K2CQ8TBX8 421 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 MAGEC3Q8TD91 643 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 EPAS1Q99814 870 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 GPCPD1Q9NPB8 672 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 ABCC11Q96J66 1382 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 VWA3AA6NCI4 1184 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 FAM107AO95990 144 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 S100A1P23297 94 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 RPS6KA1Q15418 735 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 SLC5A9Q2M3M2 681 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 P3H1Q32P28 736 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 PEX26Q7Z412 305 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 VSTM4Q8IW00 320 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 PPWD1Q96BP3 646 aaKnown RBP7.83□□□□□ -1.16
SYNE1-228ENST00000490135 NRBF2Q96F24 287 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 RBM17Q96I25 401 aaKnown RBP7.83□□□□□ -1.16
SYNE1-228ENST00000490135 HYOU1Q9Y4L1 999 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 ARHGEF9O43307 516 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 ESRRBO95718 433 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 TNNI1P19237 187 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 IFNAR2P48551 515 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 ATP8B2P98198 1209 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 DHX40Q8IX18 779 aaKnown RBP7.83□□□□□ -1.16
SYNE1-228ENST00000490135 ENOX1Q8TC92 643 aaKnown RBP7.83□□□□□ -1.16
SYNE1-228ENST00000490135 PNKPQ96T60 521 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 EFHD1Q9BUP0 239 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 TFCP2L1Q9NZI6 479 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 BTBD7Q9P203 1132 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 NIP7Q9Y221 180 aaKnown RBP eCLIP7.83□□□□□ -1.16
SYNE1-228ENST00000490135 ANKRD50Q9ULJ7 1429 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 ATP5HO75947 161 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 GSPT1P15170 499 aaKnown RBP7.83□□□□□ -1.16
SYNE1-228ENST00000490135 NQO1P15559 274 aaKnown RBP7.83□□□□□ -1.16
SYNE1-228ENST00000490135 PPP2R2AP63151 447 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 ELF3P78545 371 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-228ENST00000490135 SLC7A5Q01650 507 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 PTK2BQ14289 1009 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 PTPN21Q16825 1174 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 RINT1Q6NUQ1 792 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 FUKQ8N0W3 1084 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 MYCT1Q8N699 235 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 LENG1Q96BZ8 264 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-228ENST00000490135 FAM192AQ9GZU8 254 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 SMYD2Q9NRG4 433 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 TMCO1Q9UM00 188 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 SLC8A2Q9UPR5 921 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 ARHGAP5Q13017 1502 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 MMEP08473 750 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 KCNJ6P48051 423 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 EIF6P56537 245 aaKnown RBP7.82□□□□□ -1.16
SYNE1-228ENST00000490135 ACCSLQ4AC99 568 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 WLSQ5T9L3 541 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 TPTE2Q6XPS3 522 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 CAPN12Q6ZSI9 719 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 NDNQ99608 321 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 FAM53CQ9NYF3 392 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 ZRANB1Q9UGI0 708 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 PRKAG2Q9UGJ0 569 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 COPG1Q9Y678 874 aaKnown RBP7.82□□□□□ -1.16
SYNE1-228ENST00000490135 IGF2BP3O00425 579 aaKnown RBP eCLIP7.82□□□□□ -1.16
SYNE1-228ENST00000490135 CCNT1O60563 726 aaKnown RBP7.82□□□□□ -1.16
SYNE1-228ENST00000490135 TRPA1O75762 1119 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 SMNDC1O75940 238 aaKnown RBP eCLIP7.82□□□□□ -1.16
SYNE1-228ENST00000490135 TNNC2P02585 160 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 CLCN2P51788 898 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 FLOT2Q14254 428 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 KRT80Q6KB66 452 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 RAPH1Q70E73 1250 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-228ENST00000490135 KCNB2Q92953 911 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 RNPC3Q96LT9 517 aaKnown RBP7.82□□□□□ -1.16
SYNE1-228ENST00000490135 SH3GL2Q99962 352 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 ARPC5LQ9BPX5 153 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 NFKBIL1Q9UBC1 381 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-228ENST00000490135 FNDC3AQ9Y2H6 1198 aaKnown RBP7.82□□□□□ -1.16
SYNE1-228ENST00000490135 MAD1L1Q9Y6D9 718 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 CCDC61Q9Y6R9 512 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 CCT8L1PA6NM43 557 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 IFNB1P01574 187 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 KRT7P08729 469 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 ZNF24P17028 368 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 EEF1B2P24534 225 aaKnown RBP7.82□□□□□ -1.16
SYNE1-228ENST00000490135 CACNA2D1P54289 1103 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 CUL4AQ13619 759 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 ZNF174Q15697 407 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 KAZNQ674X7 775 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 ELMSAN1Q6PJG2 1045 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 DEPTORQ8TB45 409 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 GANCQ8TET4 914 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 CLIC6Q96NY7 704 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 KIFC3Q9BVG8 833 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 KIAA1468Q9P260 1216 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 HESX1Q9UBX0 185 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 TRAF3IP3Q9Y228 551 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 RBM8AQ9Y5S9 174 aaKnown RBP7.82□□□□□ -1.16
SYNE1-228ENST00000490135 SNX14Q9Y5W7 946 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms