RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 CELF3Q5SZQ8 465 aaKnown RBP16.36■□□□□ 0.21
BRCA1-218ENST00000489037 MCTP2Q6DN12 878 aa16.36■□□□□ 0.21
BRCA1-218ENST00000489037 SH3RF1Q7Z6J0 888 aa16.36■□□□□ 0.21
BRCA1-218ENST00000489037 FAM126BQ8IXS8 530 aa16.36■□□□□ 0.21
BRCA1-218ENST00000489037 SLC43A3Q8NBI5 491 aa16.36■□□□□ 0.21
BRCA1-218ENST00000489037 CCDC148Q8NFR7 591 aa16.36■□□□□ 0.21
BRCA1-218ENST00000489037 PPTC7Q8NI37 304 aa16.36■□□□□ 0.21
BRCA1-218ENST00000489037 PHKBQ93100 1093 aa16.36■□□□□ 0.21
BRCA1-218ENST00000489037 TRIM43Q96BQ3 446 aaPredicted RBP16.36■□□□□ 0.21
BRCA1-218ENST00000489037 CDHR1Q96JP9 859 aa16.36■□□□□ 0.21
BRCA1-218ENST00000489037 INPP4AQ96PE3 977 aaPredicted RBP16.36■□□□□ 0.21
BRCA1-218ENST00000489037 PRO3102Q9H379 93 aa16.36■□□□□ 0.21
BRCA1-218ENST00000489037 LTBP2Q14767 1821 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 DNAH12Q6ZR08 3092 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 CDKL5O76039 1030 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 SUPT20HL2P0C7V6 817 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 GNA11P29992 359 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 AP3B2Q13367 1082 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 MYSM1Q5VVJ2 828 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 GIMAP8Q8ND71 665 aaPredicted RBP16.35■□□□□ 0.21
BRCA1-218ENST00000489037 BICD2Q8TD16 824 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 BADQ92934 168 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 SPATA33Q96N06 139 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 LARP6Q9BRS8 491 aaKnown RBP16.35■□□□□ 0.21
BRCA1-218ENST00000489037 KATNAL1Q9BW62 490 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 ALDH8A1Q9H2A2 487 aaPredicted RBP16.35■□□□□ 0.21
BRCA1-218ENST00000489037 SLKQ9H2G2 1235 aaPredicted RBP16.35■□□□□ 0.21
BRCA1-218ENST00000489037 NCOA5Q9HCD5 579 aaKnown RBP16.35■□□□□ 0.21
BRCA1-218ENST00000489037 DOCK5Q9H7D0 1870 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 KAT6AQ92794 2004 aa16.35■□□□□ 0.21
BRCA1-218ENST00000489037 ESYT2A0FGR8 921 aa16.34■□□□□ 0.21
BRCA1-218ENST00000489037 SPATA31C2B4DYI2 1134 aa16.34■□□□□ 0.21
BRCA1-218ENST00000489037 NOP56O00567 594 aaKnown RBP16.34■□□□□ 0.21
BRCA1-218ENST00000489037 PPFIA4O75335 1185 aa16.34■□□□□ 0.21
BRCA1-218ENST00000489037 UBA1P22314 1058 aaKnown RBP16.34■□□□□ 0.21
BRCA1-218ENST00000489037 PTPN11Q06124 597 aaPredicted RBP16.34■□□□□ 0.21
BRCA1-218ENST00000489037 NTRK3Q16288 839 aa16.34■□□□□ 0.21
BRCA1-218ENST00000489037 NBPF20Q3BBV1 942 aa16.34■□□□□ 0.21
BRCA1-218ENST00000489037 TYW1BQ6NUM6 668 aa16.34■□□□□ 0.21
BRCA1-218ENST00000489037 NFRKBQ6P4R8 1299 aa16.34■□□□□ 0.21
BRCA1-218ENST00000489037 TDHQ8IZJ6 230 aa16.34■□□□□ 0.21
BRCA1-218ENST00000489037 GPRASP2Q96D09 838 aa16.34■□□□□ 0.21
BRCA1-218ENST00000489037 MAFGO15525 162 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 SORBS3O60504 671 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 TIMP1P01033 207 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 CD4P01730 458 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 ZNF76P36508 570 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 PKN1Q16512 942 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 SENP7Q9BQF6 1050 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 ANO3Q9BYT9 981 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 ZMYND12Q9H0C1 365 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 TBX21Q9UL17 535 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 NOD1Q9Y239 953 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 GRIN2DO15399 1336 aa16.33■□□□□ 0.2
BRCA1-218ENST00000489037 DEXIO95424 95 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 SEC24BO95487 1268 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 NEK4P51957 841 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 AK2P54819 239 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 SP2Q02086 613 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 FPGSQ05932 587 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 MTMR1Q13613 665 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 JAKMIP3Q5VZ66 844 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 METTL7BQ6UX53 244 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 CYFIP1Q7L576 1253 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 REXO1Q8N1G1 1221 aaKnown RBP16.32■□□□□ 0.2
BRCA1-218ENST00000489037 TMEM199Q8N511 208 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 SH3GLB2Q9NR46 395 aa16.32■□□□□ 0.2
BRCA1-218ENST00000489037 B4GALT4O60513 344 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 PPFIA3O75145 1194 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 PSEN2P49810 448 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 NLRP5P59047 1200 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 HSDL1Q3SXM5 330 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 MFSD5Q6N075 450 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 C7orf31Q8N865 590 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 IL17RAQ96F46 866 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 PGBD1Q96JS3 809 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 ALG1Q9BT22 464 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 PPP1R12CQ9BZL4 782 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 TRPV6Q9H1D0 765 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 HIPK3Q9H422 1215 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 JADE2Q9NQC1 790 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 TMEM260Q9NX78 707 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 UBIAD1Q9Y5Z9 338 aa16.31■□□□□ 0.2
BRCA1-218ENST00000489037 TRIP12Q14669 1992 aaPredicted RBP16.31■□□□□ 0.2
BRCA1-218ENST00000489037 PFKFB2O60825 505 aa16.3■□□□□ 0.2
BRCA1-218ENST00000489037 XBP1P17861 261 aa16.3■□□□□ 0.2
BRCA1-218ENST00000489037 CLK2P49760 499 aaKnown RBP16.3■□□□□ 0.2
BRCA1-218ENST00000489037 SEMA3FQ13275 785 aa16.3■□□□□ 0.2
BRCA1-218ENST00000489037 PPIGQ13427 754 aaKnown RBP eCLIP16.3■□□□□ 0.22e-6■■■■□ 20.9
BRCA1-218ENST00000489037 MFSD10Q14728 455 aa16.3■□□□□ 0.2
BRCA1-218ENST00000489037 MXRA8Q9BRK3 442 aa16.3■□□□□ 0.2
BRCA1-218ENST00000489037 UPF2Q9HAU5 1272 aaKnown RBP16.3■□□□□ 0.2
BRCA1-218ENST00000489037 VPS54Q9P1Q0 977 aa16.3■□□□□ 0.2
BRCA1-218ENST00000489037 PCDH10Q9P2E7 1040 aa16.3■□□□□ 0.2
BRCA1-218ENST00000489037 TPCN1Q9ULQ1 816 aa16.3■□□□□ 0.2
BRCA1-218ENST00000489037 F2P00734 622 aa16.29■□□□□ 0.2
BRCA1-218ENST00000489037 ZNF286BP0CG31 522 aa16.29■□□□□ 0.2
BRCA1-218ENST00000489037 HOXD8P13378 290 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-218ENST00000489037 ITGB5P18084 799 aa16.29■□□□□ 0.2
BRCA1-218ENST00000489037 ITGB8P26012 769 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms