RNA–Protein interactions for RNA: ENST00000488596.5

CD46-215, Transcript of CD46 molecule, human

TSL 3

Gene CD46, Length 872 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD46-215	ENST00000488596	BTG4	Q9NY30	223 aa		4.94	□□□□□ -1.62
CD46-215	ENST00000488596	SIRPG	Q9P1W8	387 aa		4.94	□□□□□ -1.62
CD46-215	ENST00000488596	EMC9	Q9Y3B6	208 aa		4.94	□□□□□ -1.62
CD46-215	ENST00000488596	ANKRD34B	A5PLL1	514 aa		4.93	□□□□□ -1.62
CD46-215	ENST00000488596	FAM221B	A6H8Z2	402 aa		4.93	□□□□□ -1.62
CD46-215	ENST00000488596	C22orf46	C9J442	243 aa		4.93	□□□□□ -1.62
CD46-215	ENST00000488596	DDX3X	O00571	662 aa	Known RBP eCLIP	4.93	□□□□□ -1.62
CD46-215	ENST00000488596	THBD	P07204	575 aa		4.93	□□□□□ -1.62
CD46-215	ENST00000488596	NBPF6	Q5VWK0	638 aa		4.93	□□□□□ -1.62
CD46-215	ENST00000488596	MRM1	Q6IN84	353 aa	Known RBP	4.93	□□□□□ -1.62
CD46-215	ENST00000488596	LGI4	Q8N135	537 aa		4.93	□□□□□ -1.62
CD46-215	ENST00000488596	BVES	Q8NE79	360 aa		4.93	□□□□□ -1.62
CD46-215	ENST00000488596	NBPF4	Q96M43	638 aa		4.93	□□□□□ -1.62
CD46-215	ENST00000488596	SRPK1	Q96SB4	655 aa	Known RBP	4.93	□□□□□ -1.62
CD46-215	ENST00000488596	AP5M1	Q9H0R1	490 aa		4.93	□□□□□ -1.62
CD46-215	ENST00000488596	PCDH18	Q9HCL0	1135 aa		4.93	□□□□□ -1.62
CD46-215	ENST00000488596	ST6GALNAC2	Q9UJ37	374 aa		4.93	□□□□□ -1.62
CD46-215	ENST00000488596	CDK11A	Q9UQ88	783 aa	Predicted RBP	4.93	□□□□□ -1.62
CD46-215	ENST00000488596	ARNTL	O00327	626 aa		4.92	□□□□□ -1.62
CD46-215	ENST00000488596	FSHB	P01225	129 aa		4.92	□□□□□ -1.62
CD46-215	ENST00000488596	FPR2	P25090	351 aa		4.92	□□□□□ -1.62
CD46-215	ENST00000488596	STAT5A	P42229	794 aa		4.92	□□□□□ -1.62
CD46-215	ENST00000488596	MILR1	Q7Z6M3	343 aa		4.92	□□□□□ -1.62
CD46-215	ENST00000488596	TTLL6	Q8N841	843 aa		4.92	□□□□□ -1.62
CD46-215	ENST00000488596	CHST13	Q8NET6	341 aa		4.92	□□□□□ -1.62
CD46-215	ENST00000488596	FRS2	Q8WU20	508 aa		4.92	□□□□□ -1.62
CD46-215	ENST00000488596	SEC14L1	Q92503	715 aa		4.92	□□□□□ -1.62
CD46-215	ENST00000488596	ZNF536	O15090	1300 aa		4.92	□□□□□ -1.62
CD46-215	ENST00000488596	B4GALT3	O60512	393 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	HMGA2	P52926	109 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	ADAM9	Q13443	819 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	CR1L	Q2VPA4	569 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	GTF2IRD2B	Q6EKJ0	949 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	GTF2IRD2	Q86UP8	949 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	FAM124A	Q86V42	546 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	ZC3H18	Q86VM9	953 aa	Known RBP	4.91	□□□□□ -1.62
CD46-215	ENST00000488596	NPLOC4	Q8TAT6	608 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	DEPDC7	Q96QD5	511 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	APBA2	Q99767	749 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	CYP26B1	Q9NR63	512 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	SNTG2	Q9NY99	539 aa		4.91	□□□□□ -1.62
CD46-215	ENST00000488596	TMEFF2	Q9UIK5	374 aa	Predicted RBP	4.91	□□□□□ -1.62
CD46-215	ENST00000488596	PDPK1	O15530	556 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	SLC6A11	P48066	632 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	RASA3	Q14644	834 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	NCAPH	Q15003	741 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	GIMAP6	Q6P9H5	292 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	BORA	Q6PGQ7	559 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	GLB1L	Q6UWU2	654 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	CEP68	Q76N32	757 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	SPRED1	Q7Z699	444 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	CCDC103	Q8IW40	242 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	TRIM59	Q8IWR1	403 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	FAM126B	Q8IXS8	530 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	DVL3	Q92997	716 aa	Predicted RBP	4.9	□□□□□ -1.63
CD46-215	ENST00000488596	MKL1	Q969V6	931 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	MRFAP1L1	Q96HT8	127 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	LCOR	Q96JN0	433 aa	Predicted RBP	4.9	□□□□□ -1.63
CD46-215	ENST00000488596	MRGPRX3	Q96LB0	322 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	SCAND2P	Q9GZW5	306 aa	Predicted RBP	4.9	□□□□□ -1.63
CD46-215	ENST00000488596	CCDC113	Q9H0I3	377 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	NKX2-4	Q9H2Z4	354 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	PPP4R1L	Q9P1A2	415 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	PFDN2	Q9UHV9	154 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	MSRB2	Q9Y3D2	182 aa		4.9	□□□□□ -1.63
CD46-215	ENST00000488596	NOP56	O00567	594 aa	Known RBP	4.89	□□□□□ -1.63
CD46-215	ENST00000488596	ZNF28	P17035	718 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	ICAM4	Q14773	271 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	CDSN	Q15517	529 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	NFE2L2	Q16236	605 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	SV2C	Q496J9	727 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	MROH9	Q5TGP6	573 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	POMZP3	Q6PJE2	187 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	SPATC1	Q76KD6	591 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	NLRP10	Q86W26	655 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	RIOX2	Q8IUF8	465 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596		Q8N1X5	172 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	4.89	□□□□□ -1.63
CD46-215	ENST00000488596	DNAJC7	Q99615	494 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	MENT	Q9BUN1	341 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	FBXL7	Q9UJT9	491 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	TIMM13	Q9Y5L4	95 aa	Predicted RBP	4.89	□□□□□ -1.63
CD46-215	ENST00000488596		X6R8D5	127 aa		4.89	□□□□□ -1.63
CD46-215	ENST00000488596	TBX1	O43435	398 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	LAMTOR5	O43504	91 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	SUSD5	O60279	629 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	C6	P13671	934 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	IL13	P35225	146 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	BCL6	P41182	706 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	MLLT6	P55198	1093 aa	Predicted RBP	4.88	□□□□□ -1.63
CD46-215	ENST00000488596	RPL11	P62913	178 aa	Known RBP	4.88	□□□□□ -1.63
CD46-215	ENST00000488596	PRAMEF18	Q5VWM3	479 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	IQCE	Q6IPM2	695 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	EEPD1	Q7L9B9	569 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596		Q8N1Y9	231 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	LILRB2	Q8N423	598 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	4.88	□□□□□ -1.63
CD46-215	ENST00000488596	PPP1R14A	Q96A00	147 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	MBD6	Q96DN6	1003 aa		4.88	□□□□□ -1.63
CD46-215	ENST00000488596	TRMT2B	Q96GJ1	504 aa	Known RBP	4.88	□□□□□ -1.63

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