RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 CD44P16070 742 aaKnown RBP13.64□□□□□ -0.23
HDAC6-230ENST00000488543 MOGSQ13724 837 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 TMEM132BQ14DG7 1078 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 CLEC4DQ8WXI8 215 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 GJA10Q969M2 543 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 ZFP91Q96JP5 570 aaPredicted RBP13.64□□□□□ -0.23
HDAC6-230ENST00000488543 PNMA5Q96PV4 448 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 ZBED4O75132 1171 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 UBXN2AP68543 259 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 TRAF1Q13077 416 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 GRB10Q13322 594 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 PPIL2Q13356 520 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 PDIA5Q14554 519 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 ARMCX5Q6P1M9 558 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 TEX2Q8IWB9 1127 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 LRRN4CLQ8ND94 238 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 REPS2Q8NFH8 660 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 KCNMB3Q9NPA1 279 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 LRWD1Q9UFC0 647 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 ZNF215Q9UL58 517 aaPredicted RBP13.64□□□□□ -0.23
HDAC6-230ENST00000488543 ADAMTS5Q9UNA0 930 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 KCNH4Q9UQ05 1017 aa13.64□□□□□ -0.23
HDAC6-230ENST00000488543 MRPL11Q9Y3B7 192 aaKnown RBP13.64□□□□□ -0.23
HDAC6-230ENST00000488543 CTDP1Q9Y5B0 961 aaPredicted RBP13.64□□□□□ -0.23
HDAC6-230ENST00000488543 RBBP6Q7Z6E9 1792 aaKnown RBP13.63□□□□□ -0.23
HDAC6-230ENST00000488543 POTEMA6NI47 508 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 CXCL11O14625 94 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 PLS1Q14651 629 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 TMEM266Q2M3C6 531 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 CHADLQ6NUI6 762 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 C2orf69Q8N8R5 385 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 PURBQ96QR8 312 aaKnown RBP13.63□□□□□ -0.23
HDAC6-230ENST00000488543 NUDT12Q9BQG2 462 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 CUEDC2Q9H467 287 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 DACH1Q9UI36 760 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 ZNF214Q9UL59 606 aaPredicted RBP13.63□□□□□ -0.23
HDAC6-230ENST00000488543 PTPRFP10586 1907 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 ABCB11O95342 1321 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 PPP1R3GB7ZBB8 358 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 KLRC4O43908 158 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 RPN1P04843 607 aaKnown RBP13.63□□□□□ -0.23
HDAC6-230ENST00000488543 ZSCAN20P17040 1043 aaPredicted RBP13.63□□□□□ -0.23
HDAC6-230ENST00000488543 PTPN14Q15678 1187 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 CCAR2Q8N163 923 aaKnown RBP13.63□□□□□ -0.23
HDAC6-230ENST00000488543 RASSF8Q8NHQ8 419 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 ENOX1Q8TC92 643 aaKnown RBP13.63□□□□□ -0.23
HDAC6-230ENST00000488543 LENG9Q96B70 501 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 MAGEF1Q9HAY2 307 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 HOXC10Q9NYD6 342 aa13.63□□□□□ -0.23
HDAC6-230ENST00000488543 SPDYE3A6NKU9 549 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 GCOM1H8Y6P7 765 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-230ENST00000488543 CYP3A4P08684 503 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 POLR2MP0CAP2 368 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 CIITAP33076 1130 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 SNRNP48Q6IEG0 339 aaKnown RBP13.62□□□□□ -0.23
HDAC6-230ENST00000488543 SMAP1Q8IYB5 467 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-230ENST00000488543 TRMT44Q8IYL2 757 aaKnown RBP13.62□□□□□ -0.23
HDAC6-230ENST00000488543 SMYD4Q8IYR2 804 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-230ENST00000488543 ETNPPLQ8TBG4 499 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 TRERF1Q96PN7 1200 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 BLOC1S4Q9NUP1 217 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 FANCLQ9NW38 375 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 COL20A1Q9P218 1284 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 ERCC5P28715 1186 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-230ENST00000488543 TPM4P67936 248 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 Q4G0T1 1027 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 TMEM119Q4V9L6 283 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 CT47A1Q5JQC4 288 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-230ENST00000488543 NYAP1Q6ZVC0 841 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 CYP2W1Q8TAV3 490 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 R3HDMLQ9H3Y0 253 aa13.62□□□□□ -0.23
HDAC6-230ENST00000488543 COL11A1P12107 1806 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-230ENST00000488543 FAM86B1E9PN63 330 aa13.61□□□□□ -0.23
HDAC6-230ENST00000488543 FAM86B2P0C5J1 330 aa13.61□□□□□ -0.23
HDAC6-230ENST00000488543 FANCCQ00597 558 aa13.61□□□□□ -0.23
HDAC6-230ENST00000488543 GPAT2Q6NUI2 795 aa13.61□□□□□ -0.23
HDAC6-230ENST00000488543 PROCA1Q8NCQ7 364 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-230ENST00000488543 ASCC2Q9H1I8 757 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-230ENST00000488543 GPBP1L1Q9HC44 474 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-230ENST00000488543 BTBD7Q9P203 1132 aa13.61□□□□□ -0.23
HDAC6-230ENST00000488543 MYL1P05976 194 aa13.61□□□□□ -0.23
HDAC6-230ENST00000488543 ZNF18P17022 549 aa13.61□□□□□ -0.23
HDAC6-230ENST00000488543 HOXA7P31268 230 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-230ENST00000488543 ECM1Q16610 540 aa13.61□□□□□ -0.23
HDAC6-230ENST00000488543 E4F1Q66K89 784 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-230ENST00000488543 CALML4Q96GE6 196 aa13.61□□□□□ -0.23
HDAC6-230ENST00000488543 MS4A4AQ96JQ5 239 aa13.61□□□□□ -0.23
HDAC6-230ENST00000488543 RAB34Q9BZG1 259 aa13.61□□□□□ -0.23
HDAC6-230ENST00000488543 HUNKP57058 714 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 IRX3P78415 501 aaPredicted RBP13.6□□□□□ -0.23
HDAC6-230ENST00000488543 KCNB1Q14721 858 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 ELF2Q15723 593 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 PRR16Q569H4 304 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 ZNF658Q5TYW1 1059 aaPredicted RBP13.6□□□□□ -0.23
HDAC6-230ENST00000488543 NSMFQ6X4W1 530 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 SNX29Q8TEQ0 813 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 C7orf25Q9BPX7 421 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 RNF146Q9NTX7 359 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 RMND1Q9NWS8 449 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 STK17AQ9UEE5 414 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms