RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 BEX3Q00994 111 aa12.59□□□□□ -0.39
UBE4B-210ENST00000488228 MCTP2Q6DN12 878 aa12.59□□□□□ -0.39
UBE4B-210ENST00000488228 IQSEC1Q6DN90 963 aa12.59□□□□□ -0.39
UBE4B-210ENST00000488228 OR6J1Q8NGC5 347 aa12.59□□□□□ -0.39
UBE4B-210ENST00000488228 UIMC1Q96RL1 719 aa12.59□□□□□ -0.39
UBE4B-210ENST00000488228 UPF3AQ9H1J1 476 aaKnown RBP12.59□□□□□ -0.39
UBE4B-210ENST00000488228 DDX41Q9UJV9 622 aaKnown RBP12.59□□□□□ -0.39
UBE4B-210ENST00000488228 MYH9P35579 1960 aaKnown RBP12.59□□□□□ -0.39
UBE4B-210ENST00000488228 MKI67P46013 3256 aaKnown RBP12.58□□□□□ -0.4
UBE4B-210ENST00000488228 IGLV3-22A0A075B6J6 115 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 SPATA31C2B4DYI2 1134 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 DYNC1LI2O43237 492 aaPredicted RBP12.58□□□□□ -0.4
UBE4B-210ENST00000488228 FIBPO43427 364 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 EDIL3O43854 480 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 TDP2O95551 362 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 GGPS1O95749 300 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 CYP3A4P08684 503 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 ZNF76P36508 570 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 SP2Q02086 613 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 ARHGAP1Q07960 439 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 MTMR1Q13613 665 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 LRRC41Q15345 812 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 SAFBQ15424 915 aaKnown RBP eCLIP12.58□□□□□ -0.4
UBE4B-210ENST00000488228 CEP55Q53EZ4 464 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 NLRX1Q86UT6 975 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 SPRYD3Q8NCJ5 442 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 GPRASP2Q96D09 838 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 INTS4Q96HW7 963 aaKnown RBP12.58□□□□□ -0.4
UBE4B-210ENST00000488228 MXRA8Q9BRK3 442 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 BCAS3Q9H6U6 928 aa12.58□□□□□ -0.4
UBE4B-210ENST00000488228 PDE4DIPQ5VU43 2346 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 VPS37CA5D8V6 355 aaPredicted RBP12.57□□□□□ -0.4
UBE4B-210ENST00000488228 KBTBD13C9JR72 458 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 H3BQV1 296 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 DNM1LO00429 736 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 WNT7AO00755 349 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 GH1P01241 217 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 HSP90AA1P07900 732 aaKnown RBP12.57□□□□□ -0.4
UBE4B-210ENST00000488228 ARP10275 920 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 KCNA2P16389 499 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 ICAM3P32942 547 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 GJA9P57773 515 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 SP4Q02446 784 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 GNL2Q13823 731 aaKnown RBP12.57□□□□□ -0.4
UBE4B-210ENST00000488228 FSCN1Q16658 493 aaKnown RBP12.57□□□□□ -0.4
UBE4B-210ENST00000488228 LETM2Q2VYF4 491 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 PRR16Q569H4 304 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 IFFO2Q5TF58 517 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 PLA2G4DQ86XP0 818 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 LENG9Q96B70 501 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 AP5M1Q9H0R1 490 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 JADE2Q9NQC1 790 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 KCNH7Q9NS40 1196 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 TELO2Q9Y4R8 837 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 DNAH12Q6ZR08 3092 aa12.57□□□□□ -0.4
UBE4B-210ENST00000488228 CEP290O15078 2479 aa12.56□□□□□ -0.4
UBE4B-210ENST00000488228 MEIS1O00470 390 aa12.56□□□□□ -0.4
UBE4B-210ENST00000488228 NKRFO15226 690 aaKnown RBP eCLIP12.56□□□□□ -0.4
UBE4B-210ENST00000488228 SLC37A4O43826 429 aa12.56□□□□□ -0.4
UBE4B-210ENST00000488228 ATP9AO75110 1047 aa12.56□□□□□ -0.4
UBE4B-210ENST00000488228 CST5P28325 142 aaPredicted RBP12.56□□□□□ -0.4
UBE4B-210ENST00000488228 SETQ01105 290 aaPredicted RBP12.56□□□□□ -0.4
UBE4B-210ENST00000488228 ITGB3BPQ13352 177 aaPredicted RBP12.56□□□□□ -0.4
UBE4B-210ENST00000488228 LARP1BQ659C4 914 aaKnown RBP12.56□□□□□ -0.4
UBE4B-210ENST00000488228 MCTP1Q6DN14 999 aa12.56□□□□□ -0.4
UBE4B-210ENST00000488228 NEK8Q86SG6 692 aa12.56□□□□□ -0.4
UBE4B-210ENST00000488228 RNF180Q86T96 592 aa12.56□□□□□ -0.4
UBE4B-210ENST00000488228 ARRDC4Q8NCT1 418 aa12.56□□□□□ -0.4
UBE4B-210ENST00000488228 KLHDC9Q8NEP7 349 aa12.56□□□□□ -0.4
UBE4B-210ENST00000488228 AFG1LQ8WV93 481 aa12.56□□□□□ -0.4
UBE4B-210ENST00000488228 PAWRQ96IZ0 340 aaKnown RBP12.56□□□□□ -0.4
UBE4B-210ENST00000488228 SPC25Q9HBM1 224 aa12.56□□□□□ -0.4
UBE4B-210ENST00000488228 AGO4Q9HCK5 861 aaKnown RBP12.56□□□□□ -0.4
UBE4B-210ENST00000488228 TNRC18O15417 2968 aaPredicted RBP12.56□□□□□ -0.4
UBE4B-210ENST00000488228 TRIP12Q14669 1992 aaPredicted RBP12.56□□□□□ -0.4
UBE4B-210ENST00000488228 ARID2Q68CP9 1835 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 DDX39AO00148 427 aaKnown RBP12.55□□□□□ -0.4
UBE4B-210ENST00000488228 MMP3P08254 477 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 ZNF286BP0CG31 522 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 CIITAP33076 1130 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 GNASQ5JWF2 1037 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 CELF3Q5SZQ8 465 aaKnown RBP12.55□□□□□ -0.4
UBE4B-210ENST00000488228 MYSM1Q5VVJ2 828 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 CCSAPQ6IQ19 270 aaPredicted RBP12.55□□□□□ -0.4
UBE4B-210ENST00000488228 KCNV1Q6PIU1 500 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 CYFIP1Q7L576 1253 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 NIPA1Q7RTP0 329 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 UBE2Q1Q7Z7E8 422 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 NOSTRINQ8IVI9 506 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 DHX37Q8IY37 1157 aaKnown RBP12.55□□□□□ -0.4
UBE4B-210ENST00000488228 ANKLE1Q8NAG6 615 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 GJA10Q969M2 543 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 FERMT2Q96AC1 680 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 CDHR1Q96JP9 859 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 SPATA33Q96N06 139 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 FOXP1Q9H334 677 aaPredicted RBP12.55□□□□□ -0.4
UBE4B-210ENST00000488228 DDX25Q9UHL0 483 aaKnown RBP12.55□□□□□ -0.4
UBE4B-210ENST00000488228 Q9Y3F1 56 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 KAT6AQ92794 2004 aa12.55□□□□□ -0.4
UBE4B-210ENST00000488228 A0A1W2PQ45 241 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms