RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 GJB5O95377 273 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 CXCL10P02778 98 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 CKBP12277 381 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 PDE4AP27815 886 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 ERVK-21P61565 698 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 SEC23AQ15436 765 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 STXBP2Q15833 593 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 ARHGEF16Q5VV41 709 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 FAM117BQ6P1L5 589 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 C7orf31Q8N865 590 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 GPKOWQ92917 476 aaPredicted RBP eCLIP16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 HDAC6Q9UBN7 1215 aa16.13■□□□□ 0.17
SQSTM1-208ENST00000485412 LINC01553A4QN01 128 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 NBNO60934 754 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 NR3C2P08235 984 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 GSPT1P15170 499 aaKnown RBP16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 HOXA13P31271 388 aaPredicted RBP16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 SSTR3P32745 418 aaPredicted RBP16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 HSD17B4P51659 736 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 RBL2Q08999 1139 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 IKBKEQ14164 716 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 DGKDQ16760 1214 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 IMMTQ16891 758 aaKnown RBP16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 TRAF7Q6Q0C0 670 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 IWS1Q96ST2 819 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 ALG1Q9BT22 464 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 KATNAL1Q9BW62 490 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 BCAS3Q9H6U6 928 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 CD320Q9NPF0 282 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 GTF2IRD1Q9UHL9 959 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 MAD2L2Q9UI95 211 aa16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 MRPL11Q9Y3B7 192 aaKnown RBP16.12■□□□□ 0.17
SQSTM1-208ENST00000485412 KCNA5P22460 613 aa16.11■□□□□ 0.17
SQSTM1-208ENST00000485412 PSEN2P49810 448 aa16.11■□□□□ 0.17
SQSTM1-208ENST00000485412 MBTPS1Q14703 1052 aa16.11■□□□□ 0.17
SQSTM1-208ENST00000485412 LEXMQ3ZCV2 418 aa16.11■□□□□ 0.17
SQSTM1-208ENST00000485412 IFIT1BQ5T764 474 aaKnown RBP16.11■□□□□ 0.17
SQSTM1-208ENST00000485412 MCF2L2Q86YR7 1114 aa16.11■□□□□ 0.17
SQSTM1-208ENST00000485412 GJD3Q8N144 294 aa16.11■□□□□ 0.17
SQSTM1-208ENST00000485412 MTMR8Q96EF0 704 aa16.11■□□□□ 0.17
SQSTM1-208ENST00000485412 MRVI1Q9Y6F6 885 aa16.11■□□□□ 0.17
SQSTM1-208ENST00000485412 MUC6Q6W4X9 2439 aa16.11■□□□□ 0.17
SQSTM1-208ENST00000485412 KLRF2D3W0D1 207 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 HAS3O00219 553 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 F2P00734 622 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 MYCLP12524 364 aaPredicted RBP16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 SP2Q02086 613 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 PTK7Q13308 1070 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 MFSD10Q14728 455 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 TRIM71Q2Q1W2 868 aaKnown RBP16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 HSDL1Q3SXM5 330 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 CCDC178Q5BJE1 867 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 HOMER1Q86YM7 354 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 FBXO22Q8NEZ5 403 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 EMID1Q96A84 441 aaPredicted RBP16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 PDCD2LQ9BRP1 358 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 UBAC1Q9BSL1 405 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 KRT23Q9C075 422 aa16.1■□□□□ 0.17
SQSTM1-208ENST00000485412 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 PALM3A6NDB9 673 aaPredicted RBP16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 PRR33A8MZF0 331 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 CYTH3O43739 400 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 EIF3JO75822 258 aaKnown RBP16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 GHRHRQ02643 423 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 PTH1RQ03431 593 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 KIAA0753Q2KHM9 967 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 ZNF618Q5T7W0 954 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 PTCRAQ6ISU1 281 aaPredicted RBP16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 FAM178BQ8IXR5 827 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 PPTC7Q8NI37 304 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 UIMC1Q96RL1 719 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 AMNQ9BXJ7 453 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 OSBPL7Q9BZF2 842 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 MAF1Q9H063 256 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 TELO2Q9Y4R8 837 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 INSL6Q9Y581 213 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 ATG2AQ2TAZ0 1938 aa16.09■□□□□ 0.17
SQSTM1-208ENST00000485412 HIP1O00291 1037 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 ZBTB5O15062 677 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 LGR5O75473 907 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 AMHP03971 560 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 HOXD8P13378 290 aaPredicted RBP16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 IL9P15248 144 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 PGM5Q15124 567 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 CSPP1Q1MSJ5 1256 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 MYSM1Q5VVJ2 828 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 STOX1Q6ZVD7 989 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 ALYREFQ86V81 257 aaKnown RBP16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 DHX37Q8IY37 1157 aaKnown RBP16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 MYOCDQ8IZQ8 938 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 PIGSQ96S52 555 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 C17orf80Q9BSJ5 609 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 CNNM2Q9H8M5 875 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 CTNNA3Q9UI47 895 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 PCDHA1Q9Y5I3 950 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 NLRC5Q86WI3 1866 aa16.08■□□□□ 0.16
SQSTM1-208ENST00000485412 GGPS1O95749 300 aa16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 CYP21A2P08686 494 aa16.07■□□□□ 0.16
SQSTM1-208ENST00000485412 ALADP13716 330 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms