RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 TAGLN3Q9UI15 199 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 SLC45A1Q9Y2W3 748 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 SHTN1A0MZ66 631 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 FKTNO75072 461 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 HIP1RO75146 1068 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 RFPL3O75679 317 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 RNASEH2AO75792 299 aaKnown RBP5.08□□□□□ -1.6
VPS41-212ENST00000482217 ALDH1L1O75891 902 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 ASMTLO95671 621 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 TBC1D8O95759 1140 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 SCGB1D2O95969 90 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 MYL1P05976 194 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 PAMP19021 973 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 RPL10P27635 214 aaKnown RBP5.08□□□□□ -1.6
VPS41-212ENST00000482217 GABREP78334 506 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 DUSP4Q13115 394 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 PPP2R5AQ15172 486 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 FNDC3BQ53EP0 1204 aaKnown RBP5.08□□□□□ -1.6
VPS41-212ENST00000482217 TRIM61Q5EBN2 209 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 L1TD1Q5T7N2 865 aaKnown RBP5.08□□□□□ -1.6
VPS41-212ENST00000482217 ERAP2Q6P179 960 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 RSPO2Q6UXX9 243 aaPredicted RBP5.08□□□□□ -1.6
VPS41-212ENST00000482217 MAMDC2Q7Z304 686 aaPredicted RBP5.08□□□□□ -1.6
VPS41-212ENST00000482217 WAPLQ7Z5K2 1190 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 FRS2Q8WU20 508 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 E2F7Q96AV8 911 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 PTCHD1Q96NR3 888 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 MMP19Q99542 508 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 IFT122Q9HBG6 1241 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 GOLGA2P5Q9HBQ8 144 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 NCOA5Q9HCD5 579 aaKnown RBP5.08□□□□□ -1.6
VPS41-212ENST00000482217 PLAAQ9Y263 795 aa5.08□□□□□ -1.6
VPS41-212ENST00000482217 GOLIM4O00461 696 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 TCERG1O14776 1098 aaKnown RBP5.07□□□□□ -1.6
VPS41-212ENST00000482217 MEFVO15553 781 aaPredicted RBP5.07□□□□□ -1.6
VPS41-212ENST00000482217 KCNQ2O43526 872 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 EFCAB14O75071 495 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 KIR2DL1P43626 348 aaPredicted RBP5.07□□□□□ -1.6
VPS41-212ENST00000482217 KIR2DL2P43627 348 aaPredicted RBP5.07□□□□□ -1.6
VPS41-212ENST00000482217 TRAPPC10P48553 1259 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 KCNAB2Q13303 367 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 PRSS53Q2L4Q9 553 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 ALDH1L2Q3SY69 923 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 HLA-DQA1Q5Y7H0 255 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 STYK1Q6J9G0 422 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 KSR2Q6VAB6 950 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 NAT16Q8N8M0 369 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 DCAF4Q8WV16 495 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 LINC01599Q8WXQ3 324 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 PTPRN2Q92932 1015 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 MAP6Q96JE9 813 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 ALPK1Q96QP1 1244 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 ZFYVE21Q9BQ24 234 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 GPRC5CQ9NQ84 441 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 ERVK13-1Q9NX77 482 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 TNFRSF10DQ9UBN6 386 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 NPFFR2Q9Y5X5 522 aa5.07□□□□□ -1.6
VPS41-212ENST00000482217 NPHP3-ACAD11A0A0J9YXS1 232 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 NPHP1O15259 732 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 SLC26A4O43511 780 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 CT47B1P0C2W7 299 aaPredicted RBP5.06□□□□□ -1.6
VPS41-212ENST00000482217 C6orf222P0C671 652 aaPredicted RBP5.06□□□□□ -1.6
VPS41-212ENST00000482217 PLS3P13797 630 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 ATF3P18847 181 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 LTBRP36941 435 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 AFMP43652 599 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 NTRK3Q16288 839 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 GRAMD1BQ3KR37 738 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 DENND5AQ6IQ26 1287 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 USP53Q70EK8 1073 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 SKAP1Q86WV1 359 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 PPIL6Q8IXY8 311 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 TTC8Q8TAM2 541 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 RSPH1Q8WYR4 309 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 DIO2Q92813 273 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 KRTAP4-12Q9BQ66 201 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 G6PC3Q9BUM1 346 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 ZNF700Q9H0M5 742 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 ALDH8A1Q9H2A2 487 aaPredicted RBP5.06□□□□□ -1.6
VPS41-212ENST00000482217 GPR27Q9NS67 375 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 SLAMF8Q9P0V8 285 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 CLEC1BQ9P126 229 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 TMEM59LQ9UK28 342 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 CTNND2Q9UQB3 1225 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 ATP8A1Q9Y2Q0 1164 aa5.06□□□□□ -1.6
VPS41-212ENST00000482217 AQP7O14520 342 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 ZGLP1P0C6A0 271 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 FAM200BP0CF97 657 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 RBP3P10745 1247 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 NAT1P18440 290 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 GDNFP39905 211 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 GPSM2P81274 684 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 CHRNEQ04844 493 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 MCL1Q07820 350 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 PABPC4Q13310 644 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS41-212ENST00000482217 TOMM20Q15388 145 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 SLC4A8Q2Y0W8 1093 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 FAM83BQ5T0W9 1011 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 ARMC3Q5W041 872 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 ZPBP2Q6X784 338 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms