RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 CELA3AP09093 270 aa7.8□□□□□ -1.16
VPS50-215ENST00000480943 EIF6P56537 245 aaKnown RBP7.8□□□□□ -1.16
VPS50-215ENST00000480943 EXOSC9Q06265 439 aaKnown RBP7.8□□□□□ -1.16
VPS50-215ENST00000480943 CDK5R2Q13319 367 aa7.8□□□□□ -1.16
VPS50-215ENST00000480943 LRRC14Q15048 493 aa7.8□□□□□ -1.16
VPS50-215ENST00000480943 DPP8Q6V1X1 898 aaPredicted RBP7.8□□□□□ -1.16
VPS50-215ENST00000480943 SP8Q8IXZ3 490 aa7.8□□□□□ -1.16
VPS50-215ENST00000480943 NIM1KQ8IY84 436 aa7.8□□□□□ -1.16
VPS50-215ENST00000480943 JARID2Q92833 1246 aaPredicted RBP7.8□□□□□ -1.16
VPS50-215ENST00000480943 CELF1Q92879 486 aaKnown RBP7.8□□□□□ -1.16
VPS50-215ENST00000480943 CACNA2D2Q9NY47 1150 aa7.8□□□□□ -1.16
VPS50-215ENST00000480943 MAP3K2Q9Y2U5 619 aa7.8□□□□□ -1.16
VPS50-215ENST00000480943 PI4KAP2A4QPH2 592 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 BBOX1O75936 387 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 PCCAP05165 728 aaPredicted RBP7.79□□□□□ -1.16
VPS50-215ENST00000480943 CD96P40200 585 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 NEXNQ0ZGT2 675 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 SF3B3Q15393 1217 aaKnown RBP7.79□□□□□ -1.16
VPS50-215ENST00000480943 TMEM67Q5HYA8 995 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 PCNX4Q63HM2 1172 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 KSR2Q6VAB6 950 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 G2E3Q7L622 706 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 WDR63Q8IWG1 891 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 GPC2Q8N158 579 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 PI4KAP1Q8N8J0 262 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 ZBTB38Q8NAP3 1195 aaPredicted RBP7.79□□□□□ -1.16
VPS50-215ENST00000480943 CCDC191Q8NCU4 936 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 RNF214Q8ND24 703 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 SUPT20HQ8NEM7 779 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 DUSP9Q99956 384 aaKnown RBP7.79□□□□□ -1.16
VPS50-215ENST00000480943 TAF1DQ9H5J8 278 aaPredicted RBP7.79□□□□□ -1.16
VPS50-215ENST00000480943 ZCCHC4Q9H5U6 513 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 SSU72Q9NP77 194 aaKnown RBP7.79□□□□□ -1.16
VPS50-215ENST00000480943 CWC25Q9NXE8 425 aaPredicted RBP7.79□□□□□ -1.16
VPS50-215ENST00000480943 HACL1Q9UJ83 578 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 PCOLCE2Q9UKZ9 415 aa7.79□□□□□ -1.16
VPS50-215ENST00000480943 IGKV5-2P06315 115 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 FAM87AP0C7U9 286 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 MED14OSP0DP75 135 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 EPHX2P34913 555 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 RASIP1Q5U651 963 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 ATG14Q6ZNE5 492 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 SV2BQ7L1I2 683 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 TMC4Q7Z404 712 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 GGNQ86UU5 652 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 LDHDQ86WU2 507 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 ISL2Q96A47 359 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 RTFDC1Q9BY42 306 aaPredicted RBP7.78□□□□□ -1.16
VPS50-215ENST00000480943 PICK1Q9NRD5 415 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 CYP8B1Q9UNU6 501 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 CTNND2Q9UQB3 1225 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 MYH13Q9UKX3 1938 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 CDHR2Q9BYE9 1310 aa7.78□□□□□ -1.16
VPS50-215ENST00000480943 PDE8AO60658 829 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 VAMP4O75379 141 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 HSP90B1P14625 803 aaKnown RBP7.77□□□□□ -1.17
VPS50-215ENST00000480943 KIAA2012Q0VF49 1180 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 CWF19L2Q2TBE0 894 aaKnown RBP7.77□□□□□ -1.17
VPS50-215ENST00000480943 SCARA3Q6AZY7 606 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 PRRT2Q7Z6L0 340 aaPredicted RBP7.77□□□□□ -1.17
VPS50-215ENST00000480943 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.77□□□□□ -1.17
VPS50-215ENST00000480943 DNAJC5GQ8N7S2 189 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 FAM181AQ8N9Y4 354 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 KIRREL1Q96J84 757 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 VPS33BQ9H267 617 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 MYH16Q9H6N6 1097 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 PCDHA4Q9UN74 947 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 CSADQ9Y600 493 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 AK5Q9Y6K8 562 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 ECM29Q5VYK3 1845 aa7.77□□□□□ -1.17
VPS50-215ENST00000480943 DCDC2CA8MYV0 355 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 EPS15P42566 896 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 GPSM2P81274 684 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 CXCL9Q07325 125 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 CCDC152Q4G0S7 254 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 PPM1JQ5JR12 505 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 ERICH6BQ5W0A0 696 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 UBE3BQ7Z3V4 1068 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 NPAS4Q8IUM7 802 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 DNAAF4Q8WXU2 420 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 GPR101Q96P66 508 aaPredicted RBP7.76□□□□□ -1.17
VPS50-215ENST00000480943 DBNDD1Q9H9R9 158 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 ZNRF3Q9ULT6 936 aa7.76□□□□□ -1.17
VPS50-215ENST00000480943 YDJCA8MPS7 323 aa7.75□□□□□ -1.17
VPS50-215ENST00000480943 RAD17O75943 681 aa7.75□□□□□ -1.17
VPS50-215ENST00000480943 RPS8P62241 208 aaKnown RBP7.75□□□□□ -1.17
VPS50-215ENST00000480943 CCDC85BQ15834 202 aaPredicted RBP7.75□□□□□ -1.17
VPS50-215ENST00000480943 DNAJC14Q6Y2X3 702 aaPredicted RBP7.75□□□□□ -1.17
VPS50-215ENST00000480943 PNMA8AQ86V59 439 aaPredicted RBP7.75□□□□□ -1.17
VPS50-215ENST00000480943 ANKRD18AQ8IVF6 992 aa7.75□□□□□ -1.17
VPS50-215ENST00000480943 EYA3Q99504 573 aa7.75□□□□□ -1.17
VPS50-215ENST00000480943 BCL2L13Q9BXK5 485 aa7.75□□□□□ -1.17
VPS50-215ENST00000480943 NSUN3Q9H649 340 aaKnown RBP7.75□□□□□ -1.17
VPS50-215ENST00000480943 RNF19AQ9NV58 838 aa7.75□□□□□ -1.17
VPS50-215ENST00000480943 POLLQ9UGP5 575 aa7.75□□□□□ -1.17
VPS50-215ENST00000480943 ZNF521Q96K83 1311 aa7.75□□□□□ -1.17
VPS50-215ENST00000480943 PASKQ96RG2 1323 aa7.75□□□□□ -1.17
VPS50-215ENST00000480943 ARAP2Q8WZ64 1704 aa7.75□□□□□ -1.17
VPS50-215ENST00000480943 PCNTO95613 3336 aa7.75□□□□□ -1.17
VPS50-215ENST00000480943 F6X3S4 739 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms