RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 ATXN2LQ8WWM7 1075 aaKnown RBP23.28■■□□□ 1.32
SDF4-206ENST00000478938 MYH1P12882 1939 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 GTPBP6O43824 516 aaPredicted RBP23.27■■□□□ 1.32
SDF4-206ENST00000478938 SP100P23497 879 aaPredicted RBP23.27■■□□□ 1.32
SDF4-206ENST00000478938 TPP2P29144 1249 aaPredicted RBP23.27■■□□□ 1.32
SDF4-206ENST00000478938 CCDC38Q502W7 563 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 TMEM67Q5HYA8 995 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 PDXDC2PQ6P474 469 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 WASF1Q92558 559 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 CENPTQ96BT3 561 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 THAP9Q9H5L6 903 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 OCEL1Q9H607 264 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 RNF14Q9UBS8 474 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 BLOC1S6Q9UL45 172 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 MYL6BP14649 208 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 GNAQP50148 359 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 RETREG2Q8NC44 543 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 IGDCC4Q8TDY8 1250 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 TLCD1Q96CP7 247 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 INPP4AQ96PE3 977 aaPredicted RBP23.27■■□□□ 1.32
SDF4-206ENST00000478938 PNMA3Q9UL41 463 aa23.27■■□□□ 1.32
SDF4-206ENST00000478938 ABCC12Q96J65 1359 aa23.26■■□□□ 1.31
SDF4-206ENST00000478938 NKRFO15226 690 aaKnown RBP eCLIP23.26■■□□□ 1.315e-6■■■□□ 17.4
SDF4-206ENST00000478938 SLC1A4P43007 532 aa23.26■■□□□ 1.31
SDF4-206ENST00000478938 TNNC1P63316 161 aa23.26■■□□□ 1.31
SDF4-206ENST00000478938 ADSSL1Q8N142 457 aa23.26■■□□□ 1.31
SDF4-206ENST00000478938 PHC3Q8NDX5 983 aa23.26■■□□□ 1.31
SDF4-206ENST00000478938 EPHB6O15197 1021 aa23.26■■□□□ 1.31
SDF4-206ENST00000478938 PALMO75781 387 aa23.26■■□□□ 1.31
SDF4-206ENST00000478938 SETSIPP0DME0 302 aa23.26■■□□□ 1.31
SDF4-206ENST00000478938 DLGAP2Q9P1A6 1054 aa23.26■■□□□ 1.31
SDF4-206ENST00000478938 LRRC42Q9Y546 428 aa23.26■■□□□ 1.31
SDF4-206ENST00000478938 SLC12A7Q9Y666 1083 aa23.26■■□□□ 1.31
SDF4-206ENST00000478938 A0A0G2JS52 829 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 GOLGA6L10A0A0M3HER8 536 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 GPAA1O43292 621 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 COPS2P61201 443 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 GFPT1Q06210 699 aaPredicted RBP23.25■■□□□ 1.31
SDF4-206ENST00000478938 LBRQ14739 615 aaKnown RBP23.25■■□□□ 1.31
SDF4-206ENST00000478938 ANKRD23Q86SG2 305 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 MYLK4Q86YV6 388 aaPredicted RBP23.25■■□□□ 1.31
SDF4-206ENST00000478938 FAM163AQ96GL9 167 aaPredicted RBP23.25■■□□□ 1.31
SDF4-206ENST00000478938 PRMT1Q99873 361 aaKnown RBP23.25■■□□□ 1.31
SDF4-206ENST00000478938 MOV10L1Q9BXT6 1211 aaKnown RBP23.25■■□□□ 1.31
SDF4-206ENST00000478938 ARHGEF3Q9NR81 526 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 PLEKHG3A1L390 1219 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 IFNAR1P17181 557 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 IFNAR2P48551 515 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 CUL1Q13616 776 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 ZNF174Q15697 407 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 SYCP3Q8IZU3 236 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 TSKSQ9UJT2 592 aa23.25■■□□□ 1.31
SDF4-206ENST00000478938 HIP1RO75146 1068 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 GNAZP19086 355 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 PDIA6Q15084 440 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 SGSM1Q2NKQ1 1148 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 ATG9AQ7Z3C6 839 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 USP38Q8NB14 1042 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 KIFAP3Q92845 792 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 RAB17Q9H0T7 212 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 SUDS3Q9H7L9 328 aaPredicted RBP23.24■■□□□ 1.31
SDF4-206ENST00000478938 DDX21Q9NR30 783 aaKnown RBP eCLIP23.24■■□□□ 1.31
SDF4-206ENST00000478938 SOS2Q07890 1332 aaPredicted RBP23.24■■□□□ 1.31
SDF4-206ENST00000478938 GRID2IPA4D2P6 1211 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 F8VZ95 297 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 MYL1P05976 194 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 ZC3H6P61129 1189 aaKnown RBP23.24■■□□□ 1.31
SDF4-206ENST00000478938 GALNTL6Q49A17 601 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 LONP2Q86WA8 852 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 TRIM22Q8IYM9 498 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 BICD1Q96G01 975 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 DNAAF2Q9NVR5 837 aaKnown RBP23.24■■□□□ 1.31
SDF4-206ENST00000478938 BIN2Q9UBW5 565 aaPredicted RBP23.24■■□□□ 1.31
SDF4-206ENST00000478938 PLAGL2Q9UPG8 496 aa23.24■■□□□ 1.31
SDF4-206ENST00000478938 SMAPO00193 183 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 LCA5LO95447 670 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 ATP6V1C1P21283 382 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 EHHADHQ08426 723 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 MTMR3Q13615 1198 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 RABL6Q3YEC7 729 aaPredicted RBP23.23■■□□□ 1.31
SDF4-206ENST00000478938 TMC3Q7Z5M5 1100 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 MAIP1Q8WWC4 291 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP23.23■■□□□ 1.31
SDF4-206ENST00000478938 ADAM7Q9H2U9 754 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 MMADHCQ9H3L0 296 aaPredicted RBP23.23■■□□□ 1.31
SDF4-206ENST00000478938 ABLIM1O14639 778 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 HGSO14964 777 aaPredicted RBP23.23■■□□□ 1.31
SDF4-206ENST00000478938 CYP27B1O15528 508 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 ZNF131P52739 623 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 RAD23BP54727 409 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 BNIP1Q12981 228 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 FOXB2Q5VYV0 432 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 ANKRD27Q96NW4 1050 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 FAM207AQ9NSI2 230 aaPredicted RBP23.23■■□□□ 1.31
SDF4-206ENST00000478938 RMND1Q9NWS8 449 aa23.23■■□□□ 1.31
SDF4-206ENST00000478938 CWC25Q9NXE8 425 aaPredicted RBP23.23■■□□□ 1.31
SDF4-206ENST00000478938 MYH2Q9UKX2 1941 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 PJA2O43164 708 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 PLS1Q14651 629 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 LMBR1LQ6UX01 489 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms