RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 C16orf59Q7L2K0 433 aa20.63■□□□□ 0.89
UPF3A-203ENST00000474056 RNPC3Q96LT9 517 aaKnown RBP20.63■□□□□ 0.89
UPF3A-203ENST00000474056 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.63■□□□□ 0.892e-8■■■■■ 40.2
UPF3A-203ENST00000474056 AGXT2Q9BYV1 514 aa20.63■□□□□ 0.89
UPF3A-203ENST00000474056 GBF1Q92538 1859 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 NID2Q14112 1375 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 TET1Q8NFU7 2136 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 KAT6AQ92794 2004 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 STAM2O75886 525 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 ZNF286BP0CG31 522 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 ACRP10323 421 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 TGFB3P10600 412 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 PSMA5P28066 241 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 ADD1P35611 737 aaKnown RBP20.62■□□□□ 0.89
UPF3A-203ENST00000474056 CCL23P55773 120 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 HSDL1Q3SXM5 330 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 GNPTABQ3T906 1256 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 PCNX4Q63HM2 1172 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 FBXL16Q8N461 479 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 WNT8AQ9H1J5 351 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 BCAS3Q9H6U6 928 aa20.62■□□□□ 0.89
UPF3A-203ENST00000474056 V9GY48 417 aaPredicted RBP20.62■□□□□ 0.89
UPF3A-203ENST00000474056 SUPT20HL2P0C7V6 817 aa20.61■□□□□ 0.89
UPF3A-203ENST00000474056 HOXD8P13378 290 aaPredicted RBP20.61■□□□□ 0.89
UPF3A-203ENST00000474056 ICAM3P32942 547 aa20.61■□□□□ 0.89
UPF3A-203ENST00000474056 NAPAP54920 295 aa20.61■□□□□ 0.89
UPF3A-203ENST00000474056 PTPN11Q06124 597 aaPredicted RBP20.61■□□□□ 0.89
UPF3A-203ENST00000474056 TMEM240Q5SV17 173 aa20.61■□□□□ 0.89
UPF3A-203ENST00000474056 SPATA33Q96N06 139 aa20.61■□□□□ 0.89
UPF3A-203ENST00000474056 PSEN2P49810 448 aa20.6■□□□□ 0.89
UPF3A-203ENST00000474056 DEFB123Q8N688 67 aa20.6■□□□□ 0.89
UPF3A-203ENST00000474056 SCLYQ96I15 445 aa20.6■□□□□ 0.89
UPF3A-203ENST00000474056 ALG1Q9BT22 464 aa20.6■□□□□ 0.89
UPF3A-203ENST00000474056 MLXIPQ9HAP2 919 aa20.6■□□□□ 0.89
UPF3A-203ENST00000474056 PCDHA6Q9UN73 950 aa20.6■□□□□ 0.89
UPF3A-203ENST00000474056 PCDHA8Q9Y5H6 950 aa20.6■□□□□ 0.89
UPF3A-203ENST00000474056 SPDYE3A6NKU9 549 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 SPATA31C2B4DYI2 1134 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 hCG_1984214I3L0E3 225 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 STXBP3O00186 592 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 FIBPO43427 364 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 F2P00734 622 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 MFSD10Q14728 455 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 PPP1R18Q6NYC8 613 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 XRRA1Q6P2D8 792 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 ZNF365Q70YC5 407 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 RUFY3Q7L099 469 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 ZNF713Q8N859 430 aaPredicted RBP20.59■□□□□ 0.89
UPF3A-203ENST00000474056 IL23AQ9NPF7 189 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 RIC8AQ9NPQ8 531 aa20.59■□□□□ 0.89
UPF3A-203ENST00000474056 CCDC196A0A1B0GTZ2 297 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 HAS3O00219 553 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 TOB2Q14106 344 aaPredicted RBP20.58■□□□□ 0.89
UPF3A-203ENST00000474056 NEDD9Q14511 834 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 KIAA0753Q2KHM9 967 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 GDF6Q6KF10 455 aaPredicted RBP20.58■□□□□ 0.89
UPF3A-203ENST00000474056 PSRC1Q6PGN9 363 aaPredicted RBP20.58■□□□□ 0.89
UPF3A-203ENST00000474056 CYFIP1Q7L576 1253 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 SESTD1Q86VW0 696 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 PGBD1Q96JS3 809 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 CTAGE1Q96RT6 745 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 KATNAL1Q9BW62 490 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 ZSWIM6Q9HCJ5 1215 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 BARHL2Q9NY43 387 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 HDAC6Q9UBN7 1215 aa20.58■□□□□ 0.89
UPF3A-203ENST00000474056 PPFIA4O75335 1185 aa20.57■□□□□ 0.88
UPF3A-203ENST00000474056 ADCY7P51828 1080 aa20.57■□□□□ 0.88
UPF3A-203ENST00000474056 PTGISQ16647 500 aa20.57■□□□□ 0.88
UPF3A-203ENST00000474056 PFKFB3Q16875 520 aaPredicted RBP20.57■□□□□ 0.88
UPF3A-203ENST00000474056 NLRX1Q86UT6 975 aa20.57■□□□□ 0.88
UPF3A-203ENST00000474056 VWCEQ96DN2 955 aa20.57■□□□□ 0.88
UPF3A-203ENST00000474056 GTF2IRD1Q9UHL9 959 aa20.57■□□□□ 0.88
UPF3A-203ENST00000474056 NOD1Q9Y239 953 aa20.57■□□□□ 0.88
UPF3A-203ENST00000474056 TELO2Q9Y4R8 837 aa20.57■□□□□ 0.88
UPF3A-203ENST00000474056 MYO9BQ13459 2157 aa20.56■□□□□ 0.88
UPF3A-203ENST00000474056 SMCO2A6NFE2 343 aa20.56■□□□□ 0.88
UPF3A-203ENST00000474056 LGALS2P05162 132 aa20.56■□□□□ 0.88
UPF3A-203ENST00000474056 ITGB5P18084 799 aa20.56■□□□□ 0.88
UPF3A-203ENST00000474056 SMAD3P84022 425 aaKnown RBP20.56■□□□□ 0.88
UPF3A-203ENST00000474056 RASIP1Q5U651 963 aa20.56■□□□□ 0.88
UPF3A-203ENST00000474056 METTL7BQ6UX53 244 aa20.56■□□□□ 0.88
UPF3A-203ENST00000474056 GPRASP2Q96D09 838 aa20.56■□□□□ 0.88
UPF3A-203ENST00000474056 SENP7Q9BQF6 1050 aa20.56■□□□□ 0.88
UPF3A-203ENST00000474056 C16orf70Q9BSU1 422 aa20.56■□□□□ 0.88
UPF3A-203ENST00000474056 UPF3BQ9BZI7 483 aaKnown RBP20.56■□□□□ 0.88
UPF3A-203ENST00000474056 UBIAD1Q9Y5Z9 338 aa20.56■□□□□ 0.88
UPF3A-203ENST00000474056 CYP46A1Q9Y6A2 500 aa20.56■□□□□ 0.88
UPF3A-203ENST00000474056 NOP56O00567 594 aaKnown RBP20.55■□□□□ 0.88
UPF3A-203ENST00000474056 PPFIA3O75145 1194 aa20.55■□□□□ 0.88
UPF3A-203ENST00000474056 SCG2P13521 617 aa20.55■□□□□ 0.88
UPF3A-203ENST00000474056 PDIA3P30101 505 aaKnown RBP20.55■□□□□ 0.88
UPF3A-203ENST00000474056 EVCP57679 992 aa20.55■□□□□ 0.88
UPF3A-203ENST00000474056 CCT2P78371 535 aaKnown RBP20.55■□□□□ 0.88
UPF3A-203ENST00000474056 NTRK3Q16288 839 aa20.55■□□□□ 0.88
UPF3A-203ENST00000474056 PKN1Q16512 942 aa20.55■□□□□ 0.88
UPF3A-203ENST00000474056 FAM109BQ6ICB4 259 aaPredicted RBP20.55■□□□□ 0.88
UPF3A-203ENST00000474056 C7orf31Q8N865 590 aa20.55■□□□□ 0.88
UPF3A-203ENST00000474056 PHKBQ93100 1093 aa20.55■□□□□ 0.88
UPF3A-203ENST00000474056 GPR20Q99678 358 aa20.55■□□□□ 0.88
UPF3A-203ENST00000474056 ANO3Q9BYT9 981 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms