RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 WWC2Q6AWC2 1192 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 PPP1R18Q6NYC8 613 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 DEFB123Q8N688 67 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 ZNF713Q8N859 430 aaPredicted RBP13.75□□□□□ -0.21
SYNE1-221ENST00000472563 GPKOWQ92917 476 aaPredicted RBP eCLIP13.75□□□□□ -0.21
SYNE1-221ENST00000472563 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.75□□□□□ -0.21
SYNE1-221ENST00000472563 USP26Q9BXU7 913 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 AGXT2Q9BYV1 514 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 MLXIPQ9HAP2 919 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 IL23AQ9NPF7 189 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 RTEL1Q9NZ71 1219 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 HAS3O00219 553 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 F2P00734 622 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 ADD1P35611 737 aaKnown RBP13.74□□□□□ -0.21
SYNE1-221ENST00000472563 METAP2P50579 478 aaKnown RBP eCLIP13.74□□□□□ -0.21
SYNE1-221ENST00000472563 CCL23P55773 120 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 EVCP57679 992 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 APOBRQ0VD83 1088 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 SEMA3FQ13275 785 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 NEDD9Q14511 834 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 TMEM240Q5SV17 173 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 RASIP1Q5U651 963 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 PSRC1Q6PGN9 363 aaPredicted RBP13.74□□□□□ -0.21
SYNE1-221ENST00000472563 NLRX1Q86UT6 975 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 SENP7Q9BQF6 1050 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 KATNAL1Q9BW62 490 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 WNT8AQ9H1J5 351 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 ZSWIM6Q9HCJ5 1215 aa13.74□□□□□ -0.21
SYNE1-221ENST00000472563 NAP1L2Q9ULW6 460 aaPredicted RBP13.74□□□□□ -0.21
SYNE1-221ENST00000472563 SPDYE3A6NKU9 549 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 PITPNM1O00562 1244 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 ACRP10323 421 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 PSEN2P49810 448 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 NAPAP54920 295 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 CHMP4BP1P59074 171 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 MFSD10Q14728 455 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 UBE2SQ16763 222 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 TYW1BQ6NUM6 668 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 METTL7BQ6UX53 244 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 ZNF365Q70YC5 407 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 Q7L0L9 218 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 RPUSD2Q8IZ73 545 aaKnown RBP13.73□□□□□ -0.21
SYNE1-221ENST00000472563 C7orf31Q8N865 590 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 PPP1R13LQ8WUF5 828 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 GPRASP2Q96D09 838 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 CDHR1Q96JP9 859 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 TM6SF1Q9BZW5 370 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 GLT8D2Q9H1C3 349 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 BCAS3Q9H6U6 928 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 RIC8AQ9NPQ8 531 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 MTMR10Q9NXD2 777 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 BARHL2Q9NY43 387 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 PCDHA6Q9UN73 950 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 NOD1Q9Y239 953 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 PCDHA8Q9Y5H6 950 aa13.73□□□□□ -0.21
SYNE1-221ENST00000472563 NID2Q14112 1375 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 LAMA2P24043 3122 aaKnown RBP13.72□□□□□ -0.21
SYNE1-221ENST00000472563 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.72□□□□□ -0.21
SYNE1-221ENST00000472563 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.72□□□□□ -0.21
SYNE1-221ENST00000472563 STXBP3O00186 592 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 FOSP01100 380 aaPredicted RBP13.72□□□□□ -0.21
SYNE1-221ENST00000472563 FGBP02675 491 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 ZNF286BP0CG31 522 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 ITGB5P18084 799 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 ADCY7P51828 1080 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 BFSP2Q13515 415 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 PTGISQ16647 500 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 KIAA0753Q2KHM9 967 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 RUFY3Q7L099 469 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 RETREG2Q8NC44 543 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 GIMAP8Q8ND71 665 aaPredicted RBP13.72□□□□□ -0.21
SYNE1-221ENST00000472563 HERVK_113Q902F9 699 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 CTAGE1Q96RT6 745 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 C16orf70Q9BSU1 422 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 EHMT1Q9H9B1 1298 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 GTF2IRD1Q9UHL9 959 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 UBIAD1Q9Y5Z9 338 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 CYP46A1Q9Y6A2 500 aa13.72□□□□□ -0.21
SYNE1-221ENST00000472563 LTBP2Q14767 1821 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 SMCO2A6NFE2 343 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 NOP56O00567 594 aaKnown RBP13.71□□□□□ -0.21
SYNE1-221ENST00000472563 MAFGO15525 162 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 PRPF3O43395 683 aaKnown RBP13.71□□□□□ -0.21
SYNE1-221ENST00000472563 SORBS3O60504 671 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 PFKMP08237 780 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 PDIA3P30101 505 aaKnown RBP13.71□□□□□ -0.21
SYNE1-221ENST00000472563 RFC2P35250 354 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 PFKFB3Q16875 520 aaPredicted RBP13.71□□□□□ -0.21
SYNE1-221ENST00000472563 GDF6Q6KF10 455 aaPredicted RBP13.71□□□□□ -0.21
SYNE1-221ENST00000472563 CYFIP1Q7L576 1253 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 CCDC155Q8N6L0 562 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 VWCEQ96DN2 955 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 SCLYQ96I15 445 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 GPR20Q99678 358 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 ALG1Q9BT22 464 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 MTIF3Q9H2K0 278 aaKnown RBP13.71□□□□□ -0.21
SYNE1-221ENST00000472563 HDAC6Q9UBN7 1215 aa13.71□□□□□ -0.21
SYNE1-221ENST00000472563 H3BRB1 525 aa13.7□□□□□ -0.22
SYNE1-221ENST00000472563 LGALS2P05162 132 aa13.7□□□□□ -0.22
SYNE1-221ENST00000472563 SCG2P13521 617 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms