RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 OPTNQ96CV9 577 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 DTNBP1Q96EV8 351 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 RBM17Q96I25 401 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 IFT74Q96LB3 600 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 GBP5Q96PP8 586 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 SEC31BQ9NQW1 1179 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 ABCF3Q9NUQ8 709 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 CNOT8Q9UFF9 292 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 IFT172Q9UG01 1749 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 ITIH6Q6UXX5 1313 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 H7C1W4 665 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 FLOT1O75955 427 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 MMEP08473 750 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 KRT16P08779 473 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 DRD4P21917 467 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 STAT6P42226 847 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 MSH2P43246 934 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 SERPINB4P48594 390 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 DEUP1Q05D60 604 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 SPAG1Q07617 926 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 MPP3Q13368 585 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 ADAM9Q13443 819 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 PTPAQ15257 358 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 CWF19L2Q2TBE0 894 aaKnown RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 TCERG1LQ5VWI1 586 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 GALNT17Q6IS24 598 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 PROCA1Q8NCQ7 364 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 WHAMMQ8TF30 809 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 ZFAND2BQ8WV99 257 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 NEUROD6Q96NK8 337 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 DDX23Q9BUQ8 820 aaKnown RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 IFIH1Q9BYX4 1025 aaKnown RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 IQCGQ9H095 443 aaKnown RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 NHEJ1Q9H9Q4 299 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 CHPF2Q9P2E5 772 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 SLC12A6Q9UHW9 1150 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 SCOCQ9UIL1 159 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 AGAP1Q9UPQ3 857 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 ABCC6O95255 1503 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 ARHGEF10O15013 1369 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 KDM6AO15550 1401 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 SRRM3A6NNA2 597 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 NUTM2BA6NNL0 878 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 DCDC2CA8MYV0 355 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 NUTM2EB1AL46 878 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 PPEF1O14829 653 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 ORC4O43929 436 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 ITGBL1O95965 494 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 GSTA1P08263 222 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 HSD17B3P37058 310 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 PIP4K2AP48426 406 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 EXOSC10Q01780 885 aaKnown RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 FUT2Q10981 343 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 BIRC3Q13489 604 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 MYBPC3Q14896 1274 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 CCDC6Q16204 474 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 Q4G0T1 1027 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 AMOTQ4VCS5 1084 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 FAM47EQ6ZV65 393 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 CASKIN2Q8WXE0 1202 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 KIFAP3Q92845 792 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 ABTB1Q969K4 478 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 LRRC45Q96CN5 670 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 XPO6Q96QU8 1125 aaKnown RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 NDNQ99608 321 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 LBHD1Q9BQE6 289 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 PRKD2Q9BZL6 878 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 NSRP1Q9H0G5 558 aaKnown RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 BLZF1Q9H2G9 400 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 AGPAT5Q9NUQ2 364 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 VPS54Q9P1Q0 977 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 ANKIB1Q9P2G1 1089 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 MAGEC2Q9UBF1 373 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 COL15A1P39059 1388 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 MYH15Q9Y2K3 1946 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 F8W031 263 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 IFIT3O14879 490 aaKnown RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 SP100P23497 879 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 GNAQP50148 359 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 METAP2P50579 478 aaKnown RBP eCLIP4.63□□□□□ -1.67
VPS50-210ENST00000471188 AIMP1Q12904 312 aaKnown RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 CDKAL1Q5VV42 579 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 ZNF365Q70YC5 407 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 WAPLQ7Z5K2 1190 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 DDX42Q86XP3 938 aaKnown RBP eCLIP4.63□□□□□ -1.67
VPS50-210ENST00000471188 CD302Q8IX05 232 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 LRRC34Q8IZ02 419 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 RETREG2Q8NC44 543 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 RUBCNQ92622 972 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 VCX3BQ9H321 246 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 VCX3AQ9NNX9 186 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.63□□□□□ -1.67
VPS50-210ENST00000471188 CWC25Q9NXE8 425 aaPredicted RBP4.63□□□□□ -1.67
VPS50-210ENST00000471188 TRIM33Q9UPN9 1127 aa4.63□□□□□ -1.67
VPS50-210ENST00000471188 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.62□□□□□ -1.67
VPS50-210ENST00000471188 C5orf60A6NFR6 353 aa4.62□□□□□ -1.67
VPS50-210ENST00000471188 BTBD18B2RXH4 712 aa4.62□□□□□ -1.67
VPS50-210ENST00000471188 NPTXRO95502 500 aa4.62□□□□□ -1.67
VPS50-210ENST00000471188 SHBGP04278 402 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms