RNA–Protein interactions for RNA: ENST00000470170.1

COL11A1-208, Transcript of collagen type XI alpha 1 chain, humanhuman

TSL 2

Gene COL11A1, Length 785 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1-208ENST00000470170 HSP90AA2PQ14568 343 aaPredicted RBP8.47□□□□□ -1.05
COL11A1-208ENST00000470170 CHRNA2Q15822 529 aa8.47□□□□□ -1.05
COL11A1-208ENST00000470170 ADAMTS17Q8TE56 1095 aa8.47□□□□□ -1.05
COL11A1-208ENST00000470170 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.47□□□□□ -1.05
COL11A1-208ENST00000470170 DDX1Q92499 740 aaKnown RBP8.47□□□□□ -1.05
COL11A1-208ENST00000470170 SGSM3Q96HU1 749 aa8.47□□□□□ -1.05
COL11A1-208ENST00000470170 AARSD1Q9BTE6 412 aaKnown RBP8.47□□□□□ -1.05
COL11A1-208ENST00000470170 CDIP1Q9H305 208 aa8.47□□□□□ -1.05
COL11A1-208ENST00000470170 EPB41L1Q9H4G0 881 aa8.47□□□□□ -1.05
COL11A1-208ENST00000470170 PCDH18Q9HCL0 1135 aa8.47□□□□□ -1.05
COL11A1-208ENST00000470170 ARHGEF4Q9NR80 690 aa8.47□□□□□ -1.05
COL11A1-208ENST00000470170 PPARGC1AQ9UBK2 798 aaKnown RBP8.47□□□□□ -1.05
COL11A1-208ENST00000470170 PCDHB4Q9Y5E5 795 aa8.47□□□□□ -1.05
COL11A1-208ENST00000470170 DUSP10Q9Y6W6 482 aa8.47□□□□□ -1.05
COL11A1-208ENST00000470170 TCRBV5S2A0A599 114 aa8.46□□□□□ -1.06
COL11A1-208ENST00000470170 PRODHO43272 600 aa8.46□□□□□ -1.06
COL11A1-208ENST00000470170 TADA3O75528 432 aa8.46□□□□□ -1.06
COL11A1-208ENST00000470170 DGKIO75912 1065 aa8.46□□□□□ -1.06
COL11A1-208ENST00000470170 EMC4Q5J8M3 183 aa8.46□□□□□ -1.06
COL11A1-208ENST00000470170 UBXN11Q5T124 520 aa8.46□□□□□ -1.06
COL11A1-208ENST00000470170 PHF20Q9BVI0 1012 aa8.46□□□□□ -1.06
COL11A1-208ENST00000470170 TRIM55Q9BYV6 548 aa8.46□□□□□ -1.06
COL11A1-208ENST00000470170 GPR27Q9NS67 375 aa8.46□□□□□ -1.06
COL11A1-208ENST00000470170 IQCA1LA6NCM1 817 aa8.45□□□□□ -1.06
COL11A1-208ENST00000470170 RPL13P26373 211 aaKnown RBP8.45□□□□□ -1.06
COL11A1-208ENST00000470170 CNR2P34972 360 aa8.45□□□□□ -1.06
COL11A1-208ENST00000470170 NKX3-2P78367 333 aa8.45□□□□□ -1.06
COL11A1-208ENST00000470170 ZFYVE27Q5T4F4 411 aa8.45□□□□□ -1.06
COL11A1-208ENST00000470170 ERICH6BQ5W0A0 696 aa8.45□□□□□ -1.06
COL11A1-208ENST00000470170 JAM3Q9BX67 310 aa8.45□□□□□ -1.06
COL11A1-208ENST00000470170 KRTAP9-3Q9BYQ3 159 aa8.45□□□□□ -1.06
COL11A1-208ENST00000470170 LNPKQ9C0E8 428 aa8.45□□□□□ -1.06
COL11A1-208ENST00000470170 DTLQ9NZJ0 730 aa8.45□□□□□ -1.06
COL11A1-208ENST00000470170 ZC3H6P61129 1189 aaKnown RBP8.44□□□□□ -1.06
COL11A1-208ENST00000470170 NAALADL2Q58DX5 795 aa8.44□□□□□ -1.06
COL11A1-208ENST00000470170 YOD1Q5VVQ6 348 aaPredicted RBP8.44□□□□□ -1.06
COL11A1-208ENST00000470170 KCNT2Q6UVM3 1135 aa8.44□□□□□ -1.06
COL11A1-208ENST00000470170 TTLL6Q8N841 843 aa8.44□□□□□ -1.06
COL11A1-208ENST00000470170 ST13P5Q8NFI4 369 aaPredicted RBP8.44□□□□□ -1.06
COL11A1-208ENST00000470170 OSBP2Q969R2 916 aa8.44□□□□□ -1.06
COL11A1-208ENST00000470170 TOE1Q96GM8 510 aaKnown RBP8.44□□□□□ -1.06
COL11A1-208ENST00000470170 PODXL2Q9NZ53 605 aa8.44□□□□□ -1.06
COL11A1-208ENST00000470170 MYOTQ9UBF9 498 aa8.44□□□□□ -1.06
COL11A1-208ENST00000470170 BLACEA4D250 179 aa8.43□□□□□ -1.06
COL11A1-208ENST00000470170 STK10O94804 968 aaKnown RBP8.43□□□□□ -1.06
COL11A1-208ENST00000470170 FGFR1P11362 822 aa8.43□□□□□ -1.06
COL11A1-208ENST00000470170 PLP2Q04941 152 aa8.43□□□□□ -1.06
COL11A1-208ENST00000470170 ADAM9Q13443 819 aa8.43□□□□□ -1.06
COL11A1-208ENST00000470170 NTRK3Q16288 839 aa8.43□□□□□ -1.06
COL11A1-208ENST00000470170 RGL3Q3MIN7 710 aa8.43□□□□□ -1.06
COL11A1-208ENST00000470170 PRRT2Q7Z6L0 340 aaPredicted RBP8.43□□□□□ -1.06
COL11A1-208ENST00000470170 ZSWIM3Q96MP5 696 aa8.43□□□□□ -1.06
COL11A1-208ENST00000470170 NGRNQ9NPE2 291 aaKnown RBP8.43□□□□□ -1.06
COL11A1-208ENST00000470170 PABPC1P11940 636 aaKnown RBP8.42□□□□□ -1.06
COL11A1-208ENST00000470170 PRR31Q5SQ13 230 aa8.42□□□□□ -1.06
COL11A1-208ENST00000470170 LCE5AQ5TCM9 118 aa8.42□□□□□ -1.06
COL11A1-208ENST00000470170 TEPPQ6URK8 271 aa8.42□□□□□ -1.06
COL11A1-208ENST00000470170 NSMFQ6X4W1 530 aa8.42□□□□□ -1.06
COL11A1-208ENST00000470170 PIP4K2CQ8TBX8 421 aa8.42□□□□□ -1.06
COL11A1-208ENST00000470170 KRTAP4-2Q9BYR5 136 aa8.42□□□□□ -1.06
COL11A1-208ENST00000470170 TRAV20A0A0B4J274 112 aa8.41□□□□□ -1.06
COL11A1-208ENST00000470170 DDX3XO00571 662 aaKnown RBP eCLIP8.41□□□□□ -1.06
COL11A1-208ENST00000470170 LRG1P02750 347 aa8.41□□□□□ -1.06
COL11A1-208ENST00000470170 MCTP2Q6DN12 878 aa8.41□□□□□ -1.06
COL11A1-208ENST00000470170 RSPO2Q6UXX9 243 aaPredicted RBP8.41□□□□□ -1.06
COL11A1-208ENST00000470170 CKAP2LQ8IYA6 745 aa8.41□□□□□ -1.06
COL11A1-208ENST00000470170 LRRC47Q8N1G4 583 aaKnown RBP8.41□□□□□ -1.06
COL11A1-208ENST00000470170 DCAF4Q8WV16 495 aa8.41□□□□□ -1.06
COL11A1-208ENST00000470170 SMOC1Q9H4F8 434 aa8.41□□□□□ -1.06
COL11A1-208ENST00000470170 KRIT1O00522 736 aa8.4□□□□□ -1.06
COL11A1-208ENST00000470170 SLC27A2O14975 620 aa8.4□□□□□ -1.06
COL11A1-208ENST00000470170 GRK2P25098 689 aa8.4□□□□□ -1.06
COL11A1-208ENST00000470170 GRK3P35626 688 aa8.4□□□□□ -1.06
COL11A1-208ENST00000470170 LBX2Q6XYB7 198 aa8.4□□□□□ -1.06
COL11A1-208ENST00000470170 SPATC1Q76KD6 591 aa8.4□□□□□ -1.06
COL11A1-208ENST00000470170 PHOSPHO1Q8TCT1 267 aa8.4□□□□□ -1.06
COL11A1-208ENST00000470170 SLC6A20Q9NP91 592 aa8.4□□□□□ -1.06
COL11A1-208ENST00000470170 RBPJLQ9UBG7 517 aa8.4□□□□□ -1.06
COL11A1-208ENST00000470170 ASH2LQ9UBL3 628 aa8.4□□□□□ -1.06
COL11A1-208ENST00000470170 WASF3Q9UPY6 502 aa8.4□□□□□ -1.06
COL11A1-208ENST00000470170 MAFKO60675 156 aa8.39□□□□□ -1.07
COL11A1-208ENST00000470170 KRTAP10-2P60368 255 aa8.39□□□□□ -1.07
COL11A1-208ENST00000470170 IFRD2Q12894 506 aaPredicted RBP8.39□□□□□ -1.07
COL11A1-208ENST00000470170 FAM26FQ5R3K3 315 aa8.39□□□□□ -1.07
COL11A1-208ENST00000470170 PRAMEF18Q5VWM3 479 aa8.39□□□□□ -1.07
COL11A1-208ENST00000470170 RBM12BQ8IXT5 1001 aaKnown RBP8.39□□□□□ -1.07
COL11A1-208ENST00000470170 TXNDC5Q8NBS9 432 aaKnown RBP8.39□□□□□ -1.07
COL11A1-208ENST00000470170 KCNJ15Q99712 375 aa8.39□□□□□ -1.07
COL11A1-208ENST00000470170 KRTAP4-11Q9BYQ6 195 aa8.39□□□□□ -1.07
COL11A1-208ENST00000470170 MSRB2Q9Y3D2 182 aa8.39□□□□□ -1.07
COL11A1-208ENST00000470170 CCDC85CA6NKD9 419 aa8.38□□□□□ -1.07
COL11A1-208ENST00000470170 U2SURPO15042 1029 aaKnown RBP8.38□□□□□ -1.07
COL11A1-208ENST00000470170 GRIN1Q05586 938 aa8.38□□□□□ -1.07
COL11A1-208ENST00000470170 KIZQ2M2Z5 673 aa8.38□□□□□ -1.07
COL11A1-208ENST00000470170 STYK1Q6J9G0 422 aa8.38□□□□□ -1.07
COL11A1-208ENST00000470170 TMC5Q6UXY8 1006 aa8.38□□□□□ -1.07
COL11A1-208ENST00000470170 TANGO6Q9C0B7 1094 aa8.38□□□□□ -1.07
COL11A1-208ENST00000470170 PPP1R1BQ9UD71 204 aaPredicted RBP8.38□□□□□ -1.07
COL11A1-208ENST00000470170 PDPK1O15530 556 aa8.37□□□□□ -1.07
COL11A1-208ENST00000470170 COL6A2P12110 1019 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms