RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 A1CFQ9NQ94 594 aaKnown RBP6.35□□□□□ -1.39
PTPN4-209ENST00000469511 SWAP70Q9UH65 585 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 MUTYHQ9UIF7 546 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 HDAC5Q9UQL6 1122 aa6.35□□□□□ -1.39
PTPN4-209ENST00000469511 COL4A6Q14031 1691 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 RNF223E7ERA6 249 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 GOLIM4O00461 696 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 ATP2A1O14983 1001 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 NBNO60934 754 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 CABYRO75952 493 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 MBD4O95243 580 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 RASA1P20936 1047 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 COPB2P35606 906 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 LTBRP36941 435 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 GGCXP38435 758 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 ERVK-21P61565 698 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 CLUL1Q15846 466 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 FAM47CQ5HY64 1035 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 CTR9Q6PD62 1173 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.34□□□□□ -1.39
PTPN4-209ENST00000469511 EP400NLQ6ZTU2 488 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 KIAA1211Q6ZU35 1233 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 TMEM57Q8N5G2 664 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 PRPF38AQ8NAV1 312 aaKnown RBP6.34□□□□□ -1.39
PTPN4-209ENST00000469511 DHX38Q92620 1227 aaKnown RBP6.34□□□□□ -1.39
PTPN4-209ENST00000469511 CCDC17Q96LX7 622 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 UCN2Q96RP3 112 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 ARHGAP9Q9BRR9 750 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 OSBPL7Q9BZF2 842 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 AP5M1Q9H0R1 490 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 BCL11AQ9H165 835 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 SH2D4AQ9H788 454 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 KANSL2Q9H9L4 492 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 IL1RAPL2Q9NP60 686 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 CLIP2Q9UDT6 1046 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 EXOC6BQ9Y2D4 811 aa6.34□□□□□ -1.39
PTPN4-209ENST00000469511 NOP58Q9Y2X3 529 aaKnown RBP6.34□□□□□ -1.39
PTPN4-209ENST00000469511 CFAP54Q96N23 3096 aa6.34□□□□□ -1.4
PTPN4-209ENST00000469511 KIAA1217Q5T5P2 1943 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 KIF28PB7ZC32 967 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 ZBED4O75132 1171 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 PFKMP08237 780 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 ACTN1P12814 892 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 GTF2F1P35269 517 aaKnown RBP eCLIP6.33□□□□□ -1.4
PTPN4-209ENST00000469511 CHMP4BP1P59074 171 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 MMRN1Q13201 1228 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 TCEAL5Q5H9L2 206 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 IQSEC1Q6DN90 963 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 AACSQ86V21 672 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 LRRC47Q8N1G4 583 aaKnown RBP6.33□□□□□ -1.4
PTPN4-209ENST00000469511 ZNF511Q8NB15 262 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 BAP1Q92560 729 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 WNT8BQ93098 351 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 TGS1Q96RS0 853 aaKnown RBP6.33□□□□□ -1.4
PTPN4-209ENST00000469511 DNAJC2Q99543 621 aaKnown RBP6.33□□□□□ -1.4
PTPN4-209ENST00000469511 RNF146Q9NTX7 359 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 LMCD1Q9NZU5 365 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 CACNA1BQ00975 2339 aa6.33□□□□□ -1.4
PTPN4-209ENST00000469511 ZBED9Q6R2W3 1325 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 IGKV6D-41A0A0C4DH26 115 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 PALM3A6NDB9 673 aaPredicted RBP6.32□□□□□ -1.4
PTPN4-209ENST00000469511 LINC01565O15544 149 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 GFRA3O60609 400 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 IGSF3O75054 1194 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 PRDM1O75626 825 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 GJB5O95377 273 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 ALAS1P13196 640 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 ADD2P35612 726 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 VCPP55072 806 aaKnown RBP6.32□□□□□ -1.4
PTPN4-209ENST00000469511 MBTPS1Q14703 1052 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 DUSP28Q4G0W2 176 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 GDF6Q6KF10 455 aaPredicted RBP6.32□□□□□ -1.4
PTPN4-209ENST00000469511 BPHLQ86WA6 291 aaPredicted RBP6.32□□□□□ -1.4
PTPN4-209ENST00000469511 CERS3Q8IU89 383 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 RNF135Q8IUD6 432 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 RETREG2Q8NC44 543 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 CHST13Q8NET6 341 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 ADAM32Q8TC27 787 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 ARHGAP45Q92619 1136 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 FRAT1Q92837 279 aaPredicted RBP6.32□□□□□ -1.4
PTPN4-209ENST00000469511 CEP95Q96GE4 821 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 TRERF1Q96PN7 1200 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 PUS7LQ9H0K6 701 aaKnown RBP6.32□□□□□ -1.4
PTPN4-209ENST00000469511 KCNH6Q9H252 994 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 NYAP2Q9P242 653 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 KIAA1671Q9BY89 1806 aa6.32□□□□□ -1.4
PTPN4-209ENST00000469511 RALGAPA2Q2PPJ7 1873 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 DOCK5Q9H7D0 1870 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 TMEM232C9JQI7 657 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 ZEB2O60315 1214 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 LGR5O75473 907 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 CSPG5O95196 566 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 ARIH2O95376 493 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 SUPT20HL2P0C7V6 817 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 ARP10275 920 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 RFC2P35250 354 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 KCNJ6P48051 423 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 ZNF200P98182 395 aaPredicted RBP6.31□□□□□ -1.4
PTPN4-209ENST00000469511 EPC2Q52LR7 807 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 PPP1R18Q6NYC8 613 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms