RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 NSUN6Q8TEA1 469 aaKnown RBP16.96■□□□□ 0.31
CXCR4-203ENST00000466288 IWS1Q96ST2 819 aa16.96■□□□□ 0.31
CXCR4-203ENST00000466288 MAF1Q9H063 256 aa16.96■□□□□ 0.31
CXCR4-203ENST00000466288 NSUN3Q9H649 340 aaKnown RBP16.96■□□□□ 0.31
CXCR4-203ENST00000466288 HOXD8P13378 290 aaPredicted RBP16.95■□□□□ 0.3
CXCR4-203ENST00000466288 ALX1Q15699 326 aa16.95■□□□□ 0.3
CXCR4-203ENST00000466288 RRP12Q5JTH9 1297 aaKnown RBP16.95■□□□□ 0.3
CXCR4-203ENST00000466288 EP400NLQ6ZTU2 488 aa16.95■□□□□ 0.3
CXCR4-203ENST00000466288 TOP1MTQ969P6 601 aa16.95■□□□□ 0.3
CXCR4-203ENST00000466288 TOMM22Q9NS69 142 aa16.95■□□□□ 0.3
CXCR4-203ENST00000466288 RSPH10B2B2RC85 870 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 RSPH10BP0C881 870 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 LAMC2Q13753 1193 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 C20orf194Q5TEA3 1177 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 SERINC5Q86VE9 423 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 FBXO11Q86XK2 927 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 TMEM192Q8IY95 271 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 OTUD7AQ8TE49 926 aaPredicted RBP16.94■□□□□ 0.3
CXCR4-203ENST00000466288 TTC14Q96N46 770 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 YME1L1Q96TA2 773 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 RMDN3Q96TC7 470 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 PHOX2BQ99453 314 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 UPF3BQ9BZI7 483 aaKnown RBP16.94■□□□□ 0.3
CXCR4-203ENST00000466288 CPVLQ9H3G5 476 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 CLDND1Q9NY35 253 aa16.94■□□□□ 0.3
CXCR4-203ENST00000466288 EIF3JO75822 258 aaKnown RBP16.93■□□□□ 0.3
CXCR4-203ENST00000466288 GOLGA8HP0CJ92 632 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 THPOP40225 353 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 CTC1Q2NKJ3 1217 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 MFSD14AQ96MC6 490 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 UBA5Q9GZZ9 404 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 ZNF318Q5VUA4 2279 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 PPFIA4O75335 1185 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 FGAP02671 866 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 SMAD2Q15796 467 aaKnown RBP16.93■□□□□ 0.3
CXCR4-203ENST00000466288 HERC4Q5GLZ8 1057 aaPredicted RBP16.93■□□□□ 0.3
CXCR4-203ENST00000466288 GPATCH4Q5T3I0 446 aaKnown RBP16.93■□□□□ 0.3
CXCR4-203ENST00000466288 RPAINQ86UA6 219 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 DHX37Q8IY37 1157 aaKnown RBP16.93■□□□□ 0.3
CXCR4-203ENST00000466288 OSBPL7Q9BZF2 842 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 MUTYHQ9UIF7 546 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 MRVI1Q9Y6F6 885 aa16.93■□□□□ 0.3
CXCR4-203ENST00000466288 ABCB11O95342 1321 aa16.92■□□□□ 0.3
CXCR4-203ENST00000466288 COL4A6Q14031 1691 aa16.92■□□□□ 0.3
CXCR4-203ENST00000466288 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.92■□□□□ 0.3
CXCR4-203ENST00000466288 DLX2Q07687 328 aaPredicted RBP16.92■□□□□ 0.3
CXCR4-203ENST00000466288 CDC37Q16543 378 aaPredicted RBP16.92■□□□□ 0.3
CXCR4-203ENST00000466288 GTF3C3Q9Y5Q9 886 aa16.92■□□□□ 0.3
CXCR4-203ENST00000466288 MYO15AQ9UKN7 3530 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 NCK2O43639 380 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 RGS20O76081 388 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 UPP2O95045 317 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 NR3C2P08235 984 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 EIF2AK2P19525 551 aaKnown RBP16.91■□□□□ 0.3
CXCR4-203ENST00000466288 HOXC8P31273 242 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 HSDL1Q3SXM5 330 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 ARHGEF16Q5VV41 709 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 MYSM1Q5VVJ2 828 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 SEPT8Q92599 483 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 C16orf70Q9BSU1 422 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 PXMP2Q9NR77 195 aa16.91■□□□□ 0.3
CXCR4-203ENST00000466288 MBTPS2O43462 519 aa16.9■□□□□ 0.3
CXCR4-203ENST00000466288 LINC00271P0C7V0 271 aa16.9■□□□□ 0.3
CXCR4-203ENST00000466288 HYAL1Q12794 435 aa16.9■□□□□ 0.3
CXCR4-203ENST00000466288 CLUL1Q15846 466 aa16.9■□□□□ 0.3
CXCR4-203ENST00000466288 MCF2L2Q86YR7 1114 aa16.9■□□□□ 0.3
CXCR4-203ENST00000466288 RNF135Q8IUD6 432 aa16.9■□□□□ 0.3
CXCR4-203ENST00000466288 PRSS33Q8NF86 280 aa16.9■□□□□ 0.3
CXCR4-203ENST00000466288 POP1Q99575 1024 aaKnown RBP16.9■□□□□ 0.3
CXCR4-203ENST00000466288 MICAL3Q7RTP6 2002 aa16.89■□□□□ 0.29
CXCR4-203ENST00000466288 C5orf67F2Z3F1 127 aa16.89■□□□□ 0.29
CXCR4-203ENST00000466288 CELF3Q5SZQ8 465 aaKnown RBP16.89■□□□□ 0.29
CXCR4-203ENST00000466288 BMP8AQ7Z5Y6 402 aa16.89■□□□□ 0.29
CXCR4-203ENST00000466288 ADGRF4Q8IZF3 695 aa16.89■□□□□ 0.29
CXCR4-203ENST00000466288 EDAQ92838 391 aa16.89■□□□□ 0.29
CXCR4-203ENST00000466288 ATP6V0A1Q93050 837 aa16.89■□□□□ 0.29
CXCR4-203ENST00000466288 SPATA33Q96N06 139 aa16.89■□□□□ 0.29
CXCR4-203ENST00000466288 HELLSQ9NRZ9 838 aa16.89■□□□□ 0.29
CXCR4-203ENST00000466288 RNF216Q9NWF9 866 aaPredicted RBP16.89■□□□□ 0.29
CXCR4-203ENST00000466288 C17orf102A2RUQ5 167 aa16.88■□□□□ 0.29
CXCR4-203ENST00000466288 TREHO43280 583 aa16.88■□□□□ 0.29
CXCR4-203ENST00000466288 SORBS3O60504 671 aa16.88■□□□□ 0.29
CXCR4-203ENST00000466288 MX1P20591 662 aa16.88■□□□□ 0.29
CXCR4-203ENST00000466288 HAND2P61296 217 aa16.88■□□□□ 0.29
CXCR4-203ENST00000466288 IER5LQ5T953 404 aa16.88■□□□□ 0.29
CXCR4-203ENST00000466288 IFIH1Q9BYX4 1025 aaKnown RBP16.88■□□□□ 0.29
CXCR4-203ENST00000466288 MRPL11Q9Y3B7 192 aaKnown RBP16.88■□□□□ 0.29
CXCR4-203ENST00000466288 OPLAHO14841 1288 aa16.87■□□□□ 0.29
CXCR4-203ENST00000466288 GRM6O15303 877 aa16.87■□□□□ 0.29
CXCR4-203ENST00000466288 CAND2O75155 1236 aa16.87■□□□□ 0.29
CXCR4-203ENST00000466288 TBX10O75333 385 aa16.87■□□□□ 0.29
CXCR4-203ENST00000466288 RB1P06400 928 aa16.87■□□□□ 0.29
CXCR4-203ENST00000466288 HSPD1P10809 573 aaKnown RBP16.87■□□□□ 0.29
CXCR4-203ENST00000466288 CTNNB1P35222 781 aa16.87■□□□□ 0.29
CXCR4-203ENST00000466288 SP2Q02086 613 aa16.87■□□□□ 0.29
CXCR4-203ENST00000466288 QRICH1Q2TAL8 776 aa16.87■□□□□ 0.29
CXCR4-203ENST00000466288 TBC1D10CQ8IV04 446 aa16.87■□□□□ 0.29
CXCR4-203ENST00000466288 IL17RAQ96F46 866 aa16.87■□□□□ 0.29
CXCR4-203ENST00000466288 LMAN2LQ9H0V9 348 aa16.87■□□□□ 0.29
CXCR4-203ENST00000466288 TECTAO75443 2155 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms