RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CCDC170Q8IYT3 715 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 CCDC155Q8N6L0 562 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 NOA1Q8NC60 698 aaKnown RBP9.94□□□□□ -0.82
SYNE1-217ENST00000466159 EIF3CQ99613 913 aaKnown RBP9.94□□□□□ -0.82
SYNE1-217ENST00000466159 ANO3Q9BYT9 981 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 LRRC27Q9C0I9 530 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 MMRN2Q9H8L6 949 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 PANK4Q9NVE7 773 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 NYAP2Q9P242 653 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 MEIS2O14770 477 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 KRT86O43790 486 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 TAL1P17542 331 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-217ENST00000466159 RAD51AP2Q09MP3 1159 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 BRD3Q15059 726 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 STRIP1Q5VSL9 837 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 C2CD5Q86YS7 1000 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 MYOCDQ8IZQ8 938 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 MSANTD4Q8NCY6 345 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 DCAF4Q8WV16 495 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 IDI2Q9BXS1 227 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 KCNMB3Q9NPA1 279 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 PLAGL2Q9UPG8 496 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 MACROD2A1Z1Q3 448 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 F5H6K3 240 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 IPO7O95373 1038 aaKnown RBP9.93□□□□□ -0.82
SYNE1-217ENST00000466159 FGFR1OPO95684 399 aaKnown RBP9.93□□□□□ -0.82
SYNE1-217ENST00000466159 APBA3O96018 575 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 JAG1P78504 1218 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 ICA1Q05084 483 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 KLRC3Q07444 240 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 FAM26FQ5R3K3 315 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 HYIQ5T013 277 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 TATDN1Q6P1N9 297 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 ZNF662Q6ZS27 426 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 CCDC42Q96M95 316 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 TRIM34Q9BYJ4 488 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 ARHGAP20Q9P2F6 1191 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 RAB21Q9UL25 225 aa9.93□□□□□ -0.82
SYNE1-217ENST00000466159 TRAF5O00463 557 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 POLR3GO15318 223 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-217ENST00000466159 MED24O75448 989 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 PLA2G4BP0C869 781 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 USP11P51784 963 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 CDK17Q00537 523 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 USH1GQ495M9 461 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 ZCWPW2Q504Y3 356 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 NELFCDQ8IXH7 590 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 TSG101Q99816 390 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 MRIQ9BWK5 157 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 UBXN6Q9BZV1 441 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 TANGO6Q9C0B7 1094 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 NT5C3AQ9H0P0 336 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 TDRD3Q9H7E2 651 aaKnown RBP9.92□□□□□ -0.82
SYNE1-217ENST00000466159 ZCCHC17Q9NP64 241 aaKnown RBP9.92□□□□□ -0.82
SYNE1-217ENST00000466159 SLX4Q8IY92 1834 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 HNRNPH3P31942 346 aaKnown RBP9.92□□□□□ -0.82
SYNE1-217ENST00000466159 VSNL1P62760 191 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 SMC1AQ14683 1233 aaKnown RBP9.92□□□□□ -0.82
SYNE1-217ENST00000466159 PRR16Q569H4 304 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 BEND6Q5SZJ8 279 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-217ENST00000466159 RRAGAQ7L523 313 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 CCDC84Q86UT8 332 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-217ENST00000466159 GPBP1Q86WP2 473 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 SMCR8Q8TEV9 937 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-217ENST00000466159 ZBTB9Q96C00 473 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 MMS19Q96T76 1030 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 GLT8D2Q9H1C3 349 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 SUGCTQ9HAC7 445 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 BMP2KQ9NSY1 1161 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-217ENST00000466159 PCDHA2Q9Y5H9 948 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 SAR1BQ9Y6B6 198 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 ABCB11O95342 1321 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 KDM3AQ9Y4C1 1321 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 SMCHD1A6NHR9 2005 aa9.92□□□□□ -0.82
SYNE1-217ENST00000466159 CYP3A7-CYP3A51PA0A087WV96 503 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 POTEFA5A3E0 1075 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 LRRC53A6NM62 1247 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 POTEB2H3BUK9 544 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 NDUFB10O96000 172 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 POTEIP0CG38 1075 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 CYP11B2P19099 503 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 CYP3A7P24462 503 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 CHRNA5P30532 468 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 EIF4A3P38919 411 aaKnown RBP9.91□□□□□ -0.82
SYNE1-217ENST00000466159 VAV2P52735 878 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 ARHGAP4P98171 946 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 FKBP3Q00688 224 aaKnown RBP9.91□□□□□ -0.82
SYNE1-217ENST00000466159 KCNMA1Q12791 1236 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 KIF5AQ12840 1032 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 IKQ13123 557 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-217ENST00000466159 RRP1BQ14684 758 aaKnown RBP9.91□□□□□ -0.82
SYNE1-217ENST00000466159 SPA17Q15506 151 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 AOC3Q16853 763 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 ABCB5Q2M3G0 1257 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 HERC4Q5GLZ8 1057 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-217ENST00000466159 PAPD7Q5XG87 772 aaKnown RBP9.91□□□□□ -0.82
SYNE1-217ENST00000466159 POTEGQ6S5H5 508 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 POTEEQ6S8J3 1075 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 TMEM179Q6ZVK1 233 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 CRYGNQ8WXF5 182 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms