RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CXXC1Q9P0U4 656 aaPredicted RBP20.4■□□□□ 0.86
COL7A1-205ENST00000465238 KIAA1217Q5T5P2 1943 aa20.39■□□□□ 0.86
COL7A1-205ENST00000465238 NID2Q14112 1375 aa20.39■□□□□ 0.85
COL7A1-205ENST00000465238 PPP1R11O60927 126 aaPredicted RBP20.39■□□□□ 0.85
COL7A1-205ENST00000465238 STK3Q13188 491 aa20.39■□□□□ 0.85
COL7A1-205ENST00000465238 NBPF20Q3BBV1 942 aa20.39■□□□□ 0.85
COL7A1-205ENST00000465238 FAM47CQ5HY64 1035 aa20.39■□□□□ 0.85
COL7A1-205ENST00000465238 NFRKBQ6P4R8 1299 aa20.39■□□□□ 0.85
COL7A1-205ENST00000465238 CCDC62Q6P9F0 684 aa20.39■□□□□ 0.85
COL7A1-205ENST00000465238 OTOP2Q7RTS6 562 aa20.39■□□□□ 0.85
COL7A1-205ENST00000465238 COPS5Q92905 334 aa20.39■□□□□ 0.85
COL7A1-205ENST00000465238 TAAR1Q96RJ0 339 aa20.39■□□□□ 0.85
COL7A1-205ENST00000465238 KIF2CQ99661 725 aa20.39■□□□□ 0.85
COL7A1-205ENST00000465238 COL25A1Q9BXS0 654 aaPredicted RBP20.39■□□□□ 0.85
COL7A1-205ENST00000465238 MSRAQ9UJ68 235 aa20.39■□□□□ 0.85
COL7A1-205ENST00000465238 hCG_1642624A0A1W2PR95 340 aa20.38■□□□□ 0.85
COL7A1-205ENST00000465238 ARIH2O95376 493 aa20.38■□□□□ 0.85
COL7A1-205ENST00000465238 PFKMP08237 780 aa20.38■□□□□ 0.85
COL7A1-205ENST00000465238 CYP2C9P11712 490 aa20.38■□□□□ 0.85
COL7A1-205ENST00000465238 PTPN11Q06124 597 aaPredicted RBP20.38■□□□□ 0.85
COL7A1-205ENST00000465238 RABEP1Q15276 862 aa20.38■□□□□ 0.85
COL7A1-205ENST00000465238 STXBP2Q15833 593 aa20.38■□□□□ 0.85
COL7A1-205ENST00000465238 TBC1D32Q96NH3 1257 aa20.38■□□□□ 0.85
COL7A1-205ENST00000465238 RMDN3Q96TC7 470 aa20.38■□□□□ 0.85
COL7A1-205ENST00000465238 SLKQ9H2G2 1235 aaPredicted RBP20.38■□□□□ 0.85
COL7A1-205ENST00000465238 COL20A1Q9P218 1284 aa20.38■□□□□ 0.85
COL7A1-205ENST00000465238 V9GY48 417 aaPredicted RBP20.38■□□□□ 0.85
COL7A1-205ENST00000465238 VCANP13611 3396 aa20.37■□□□□ 0.85
COL7A1-205ENST00000465238 GBF1Q92538 1859 aa20.37■□□□□ 0.85
COL7A1-205ENST00000465238 CNTNAP5Q8WYK1 1306 aa20.37■□□□□ 0.85
COL7A1-205ENST00000465238 CPLX1O14810 134 aa20.37■□□□□ 0.85
COL7A1-205ENST00000465238 FUT2Q10981 343 aa20.37■□□□□ 0.85
COL7A1-205ENST00000465238 CPLX2Q6PUV4 134 aaKnown RBP20.37■□□□□ 0.85
COL7A1-205ENST00000465238 SCLYQ96I15 445 aa20.37■□□□□ 0.85
COL7A1-205ENST00000465238 NCOA5Q9HCD5 579 aaKnown RBP20.37■□□□□ 0.85
COL7A1-205ENST00000465238 TPCN1Q9ULQ1 816 aa20.37■□□□□ 0.85
COL7A1-205ENST00000465238 GH1P01241 217 aa20.36■□□□□ 0.85
COL7A1-205ENST00000465238 AKAP17AQ02040 695 aaKnown RBP20.36■□□□□ 0.85
COL7A1-205ENST00000465238 ARHGEF16Q5VV41 709 aa20.36■□□□□ 0.85
COL7A1-205ENST00000465238 SEPT14Q6ZU15 432 aa20.36■□□□□ 0.85
COL7A1-205ENST00000465238 GAS2L1Q99501 681 aaPredicted RBP20.36■□□□□ 0.85
COL7A1-205ENST00000465238 SLC4A7Q9Y6M7 1214 aa20.36■□□□□ 0.85
COL7A1-205ENST00000465238 PITPNM1O00562 1244 aa20.35■□□□□ 0.85
COL7A1-205ENST00000465238 PFKFB2O60825 505 aa20.35■□□□□ 0.85
COL7A1-205ENST00000465238 CFBP00751 764 aa20.35■□□□□ 0.85
COL7A1-205ENST00000465238 IFNAR1P17181 557 aa20.35■□□□□ 0.85
COL7A1-205ENST00000465238 RFC2P35250 354 aa20.35■□□□□ 0.85
COL7A1-205ENST00000465238 GHRHRQ02643 423 aa20.35■□□□□ 0.85
COL7A1-205ENST00000465238 HEATR3Q7Z4Q2 680 aa20.35■□□□□ 0.85
COL7A1-205ENST00000465238 IL27Q8NEV9 243 aa20.35■□□□□ 0.85
COL7A1-205ENST00000465238 AFG1LQ8WV93 481 aa20.35■□□□□ 0.85
COL7A1-205ENST00000465238 VWCEQ96DN2 955 aa20.35■□□□□ 0.85
COL7A1-205ENST00000465238 SLC28A3Q9HAS3 691 aa20.35■□□□□ 0.85
COL7A1-205ENST00000465238 MAP3K20Q9NYL2 800 aaKnown RBP20.35■□□□□ 0.85
COL7A1-205ENST00000465238 CHD7Q9P2D1 2997 aa20.34■□□□□ 0.85
COL7A1-205ENST00000465238 PRPF3O43395 683 aaKnown RBP20.34■□□□□ 0.85
COL7A1-205ENST00000465238 EIF3JO75822 258 aaKnown RBP20.34■□□□□ 0.85
COL7A1-205ENST00000465238 MMP3P08254 477 aa20.34■□□□□ 0.85
COL7A1-205ENST00000465238 HSD17B4P51659 736 aa20.34■□□□□ 0.85
COL7A1-205ENST00000465238 ARHGAP1Q07960 439 aa20.34■□□□□ 0.85
COL7A1-205ENST00000465238 NTRK3Q16288 839 aa20.34■□□□□ 0.85
COL7A1-205ENST00000465238 LY6KQ17RY6 165 aa20.34■□□□□ 0.85
COL7A1-205ENST00000465238 SAMD3Q8N6K7 520 aa20.34■□□□□ 0.85
COL7A1-205ENST00000465238 PXMP2Q9NR77 195 aa20.34■□□□□ 0.85
COL7A1-205ENST00000465238 LIMCH1Q9UPQ0 1083 aa20.34■□□□□ 0.85
COL7A1-205ENST00000465238 NOD1Q9Y239 953 aa20.34■□□□□ 0.85
COL7A1-205ENST00000465238 SCN5AQ14524 2016 aa20.34■□□□□ 0.85
COL7A1-205ENST00000465238 TANC1Q9C0D5 1861 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 ZBBXA8MT70 800 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 OPLAHO14841 1288 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 ST18O60284 1047 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 NR3C2P08235 984 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 EIF2AK2P19525 551 aaKnown RBP20.33■□□□□ 0.85
COL7A1-205ENST00000465238 SSRP1Q08945 709 aaKnown RBP20.33■□□□□ 0.85
COL7A1-205ENST00000465238 SCRN1Q12765 414 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 BFSP2Q13515 415 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 TRIM22Q8IYM9 498 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 RETREG2Q8NC44 543 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 GPKOWQ92917 476 aaPredicted RBP eCLIP20.33■□□□□ 0.85
COL7A1-205ENST00000465238 PHKBQ93100 1093 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 SLC26A6Q9BXS9 759 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 RNF26Q9BY78 433 aaPredicted RBP20.33■□□□□ 0.85
COL7A1-205ENST00000465238 NKX2-4Q9H2Z4 354 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 PRDM12Q9H4Q4 367 aa20.33■□□□□ 0.85
COL7A1-205ENST00000465238 DDX41Q9UJV9 622 aaKnown RBP20.33■□□□□ 0.85
COL7A1-205ENST00000465238 TTC28Q96AY4 2481 aa20.33■□□□□ 0.84
COL7A1-205ENST00000465238 GCOM1H8Y6P7 765 aaPredicted RBP20.32■□□□□ 0.84
COL7A1-205ENST00000465238 hCG_1984214I3L0E3 225 aa20.32■□□□□ 0.84
COL7A1-205ENST00000465238 CDKL5O76039 1030 aa20.32■□□□□ 0.84
COL7A1-205ENST00000465238 POLR2MP0CAP2 368 aa20.32■□□□□ 0.84
COL7A1-205ENST00000465238 ACTN1P12814 892 aa20.32■□□□□ 0.84
COL7A1-205ENST00000465238 ME3Q16798 604 aa20.32■□□□□ 0.84
COL7A1-205ENST00000465238 DEFB128Q7Z7B8 93 aa20.32■□□□□ 0.84
COL7A1-205ENST00000465238 SESTD1Q86VW0 696 aa20.32■□□□□ 0.84
COL7A1-205ENST00000465238 ZNF713Q8N859 430 aaPredicted RBP20.32■□□□□ 0.84
COL7A1-205ENST00000465238 PPP1R13LQ8WUF5 828 aa20.32■□□□□ 0.84
COL7A1-205ENST00000465238 EMID1Q96A84 441 aaPredicted RBP20.32■□□□□ 0.84
COL7A1-205ENST00000465238 YBX2Q9Y2T7 364 aaKnown RBP20.32■□□□□ 0.84
COL7A1-205ENST00000465238 PCDHA11Q9Y5I1 949 aa20.32■□□□□ 0.84
COL7A1-205ENST00000465238 PPFIA3O75145 1194 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms