RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 GJA10Q969M2 543 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 PNPLA6Q8IY17 1366 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 PDE1CQ14123 709 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 ZKSCAN8Q15776 578 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 ZMYND12Q9H0C1 365 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 KCNF1Q9H3M0 494 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 PFDN4Q9NQP4 134 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 TMEM232C9JQI7 657 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 ATF7P17544 494 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 NT5C1BQ96P26 610 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 TADA3O75528 432 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 PLCG1P19174 1290 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 CYP27A1Q02318 531 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 CDC37Q16543 378 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 BSPRYQ5W0U4 402 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 GSDMBQ8TAX9 411 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 DEPTORQ8TB45 409 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 AIFM3Q96NN9 605 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 PRPF6O94906 941 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 DR1Q01658 176 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 FAM102BQ5T8I3 360 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 TMED8Q6PL24 325 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 NSMFQ6X4W1 530 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 NFU1Q9UMS0 254 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 H7C1W4 665 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 BTDP43251 543 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 LCORLQ8N3X6 602 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 TBCKQ8TEA7 893 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 ADCY1Q08828 1119 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 SGO2Q562F6 1265 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 AS3MTQ9HBK9 375 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 SLC5A4Q9NY91 659 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 CDC42BPBQ9Y5S2 1711 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 USP42Q9H9J4 1324 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 GRID2IPA4D2P6 1211 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 SMIM24O75264 130 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 FAM133BQ5BKY9 247 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 CCDC125Q86Z20 511 aa20.62■□□□□ 0.89
CCDC88B-204ENST00000463837 LIG4P49917 911 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 USP14P54578 494 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 HIBCHQ6NVY1 386 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 CPXCR1Q8N123 301 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 CCDC17Q96LX7 622 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 PLAAQ9Y263 795 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 CD2APQ9Y5K6 639 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 IL6STP40189 918 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 KRT81Q14533 505 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 LRRC47Q8N1G4 583 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 RASGRP4Q8TDF6 673 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 RNF34Q969K3 372 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 ANAPC5Q9UJX4 755 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 CLTCL1P53675 1640 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 GGCXP38435 758 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 SMCR8Q8TEV9 937 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 CSADQ9Y600 493 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 KRT19P08727 400 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 ODR4Q5SWX8 454 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 DPY19L2Q6NUT2 758 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 PROM2Q8N271 834 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 TAB3Q8N5C8 712 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 TRIM6Q9C030 488 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 CEP72Q9P209 647 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 PODXLO00592 558 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 CTIFO43310 598 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 ARHGAP4P98171 946 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 EMILIN3Q9NT22 766 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 PCDHA1Q9Y5I3 950 aa20.61■□□□□ 0.89
CCDC88B-204ENST00000463837 POC1B-GALNT4F8VUJ3 575 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 CDC25AP30304 524 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 SLC12A2P55011 1212 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 RNF168Q8IYW5 571 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 AMNQ9BXJ7 453 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 MADDQ8WXG6 1647 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 GOLGA8QA0A0J9YX86 632 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 GOLGA8OA6NCC3 632 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 GOLGA8NF8WBI6 632 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 ZWINTO95229 277 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 TCP10Q12799 353 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 LRRC41Q15345 812 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 VIPAS39Q9H9C1 493 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 NOP53Q9NZM5 478 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 INHBAP08476 426 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 DMP1Q13316 513 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 RHOT2Q8IXI1 618 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 MB21D2Q8IYB1 491 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 CNKSR1Q969H4 720 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 ZNF653Q96CK0 615 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 PPP1R9AQ9ULJ8 1098 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 SKIP12755 728 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 MCF2L2Q86YR7 1114 aa20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 N4BP2L2Q92802 583 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-204ENST00000463837 MAPK4P31152 587 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 CYP2C19P33261 490 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 GARSP41250 739 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 DCAF15Q66K64 600 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 NLGN1Q8N2Q7 840 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 PROCA1Q8NCQ7 364 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 STRBPQ96SI9 672 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 TMEM206Q9H813 350 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 GCNT4Q9P109 453 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms